myRT

myRT report for GCA_013376655.1_ASM1337665v1

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Seq: VCPR01000012.1 Pseudomonas putida strain TT321 NODE_12_length_165001_cov_274.383243, whole genome shotgun sequence (165001 bp)
Overview 1 RT 1: 76711-85026 bp Neighborhood of RT #1 [76711, 85082] PRK07232 MrcA RVT_N RVT-GII YkfC HNH PilM PilN Feature: gene Location: 76711-77988 bp Feature: domain Description: PRK07232 Location: 76729-77938 bp Feature: domain Description: PRK07232 Location: 76729-77938 bp Feature: gene Location: 78167-80695 bp Feature: domain Description: MrcA Location: 78248-80621 bp Feature: domain Description: MrcA Location: 78248-80621 bp Feature: gene Location: 80749-82455 bp Feature: RT Description: RVT_N Location: 80806-81049 bp Feature: RT Description: RVT_N Location: 80806-81 049 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81094-81730 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81 094-81 730 bp Feature: domain Description: YkfC Location: 81928-82081 bp Feature: domain Description: YkfC Location: 81 928-82081 bp Feature: domain Description: HNH Note: nucleases Location: 82267-82405 bp Feature: domain Description: HNH Note: nucleases Location: 82267-82405 bp Feature: gene Location: 83668-84549 bp Feature: domain Description: PilM Location: 83671-84202 bp Feature: domain Description: PilM Location: 83671 -84202 bp Feature: gene Location: 84546-85082 bp Feature: domain Description: PilN Location: 84549-85026 bp Feature: domain Description: PilN Location: 84549-85026 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK07232 (bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed), MrcA (COG5009), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), PilM (pfam07419), PilN (pfam05137)

Seq: VCPR01000014.1 Pseudomonas putida strain TT321 NODE_14_length_147836_cov_243.554294, whole genome shotgun sequence (147836 bp)
Overview 1 RT 1: 6487-10134 bp Neighborhood of RT #1 [6487, 10154] MFS_MdfA_MDR_like MFS_MdfA_MDR_like RVT-GII GIIM GlcG Feature: gene Location: 6487-6834 bp Feature: domain Description: MFS_MdfA_MDR_like Location: 6493-6784 bp Feature: domain Description: MFS_MdfA_MDR_like Location: 6493-6784 bp Feature: gene Location: 7002-7280 bp Feature: domain Description: MFS_MdfA_MDR_like Location: 7005-7278 bp Feature: domain Description: MFS_MdfA_MDR_like Location: 7005-72 78 bp Feature: gene Location: 7286-7975 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7292-7700 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72 92 -7700 bp Feature: domain Description: GIIM Note: maturase Location: 7757-7964 bp Feature: domain Description: GIIM Note: maturase Location: 7757-7964 bp Feature: gene Location: 8219-9670 bp Feature: gene Location: 9714-10154 bp Feature: domain Description: GlcG Location: 9735-10134 bp Feature: domain Description: GlcG Location: 9735-10134 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_MdfA_MDR_like (cd17320), RVT-GII, GIIM (pfam08388), GlcG (COG3193)

Seq: VCPR01000017.1 Pseudomonas putida strain TT321 NODE_17_length_112701_cov_270.038260, whole genome shotgun sequence (112701 bp)
Overview 1 RT 1: 68869-75459 bp Neighborhood of RT #1 [68869, 75506] IS5 RVT-GII GIIM IS5 TPR TPR TPR TPR TPR_19 Feature: gene Location: 68869-69846 bp Feature: gene Location: 70514-70972 bp Feature: domain Description: IS5 Location: 70517-70949 bp Feature: domain Description: IS5 Location: 70517-70949 bp Feature: gene Location: 71058-72311 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71271-71928 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71271-71928 bp Feature: domain Description: GIIM Note: maturase Location: 72006-72228 bp Feature: domain Description: GIIM Note: maturase Location: 72006-72228 bp Feature: gene Location: 72806-73348 bp Feature: domain Description: IS5 Location: 72992-73325 bp Feature: domain Description: IS5 Location: 72992-73 3 25 bp Feature: gene Location: 73785-75506 bp Feature: domain Description: TPR Location: 74145-74412 bp Feature: domain Description: TPR Location: 74145-74412 bp Feature: domain Description: TPR Location: 74454-74601 bp Feature: domain Description: TPR Location: 74454-74601 bp Feature: domain Description: TPR Location: 74646-74925 bp Feature: domain Description: TPR Location: 74646-74925 bp Feature: domain Description: TPR Location: 74973-75186 bp Feature: domain Description: TPR Location: 74973 -75186 bp Feature: domain Description: TPR_19 Location: 75300-75459 bp Feature: domain Description: TPR_19 Location: 753 00-75459 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS5 (COG3039), RVT-GII, GIIM (pfam08388), TPR (smart00028), TPR_19 (pfam14559)