myRT

myRT report for GCA_013376675.1_ASM1337667v1

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Seq: VCPS01000014.1 Pseudomonas putida strain TT322 NODE_14_length_147833_cov_226.108537, whole genome shotgun sequence (147833 bp)
Overview 1 RT 1: 137680-141297 bp Neighborhood of RT #1 [137680, 141347] GlcG RVT-GII GIIM MFS_MdfA_MDR_like MFS_MdfA_MDR_like Feature: gene Location: 137680-138120 bp Feature: domain Description: GlcG Location: 137701-138100 bp Feature: domain Description: GlcG Location: 1 37701 -1 381 00 bp Feature: gene Location: 138305-139615 bp Feature: gene Location: 139859-140548 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 139865-140273 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 39865-1 40273 bp Feature: domain Description: GIIM Note: maturase Location: 140330-140537 bp Feature: domain Description: GIIM Note: maturase Location: 1 40330-1 40537 bp Feature: gene Location: 140554-140832 bp Feature: domain Description: MFS_MdfA_MDR_like Location: 140557-140830 bp Feature: domain Description: MFS_MdfA_MDR_like Location: 1 40557-1 40830 bp Feature: gene Location: 141000-141347 bp Feature: domain Description: MFS_MdfA_MDR_like Location: 141006-141297 bp Feature: domain Description: MFS_MdfA_MDR_like Location: 1 41 006-1 41 297 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlcG (COG3193), RVT-GII, GIIM (pfam08388), MFS_MdfA_MDR_like (cd17320)

Seq: VCPS01000015.1 Pseudomonas putida strain TT322 NODE_15_length_138917_cov_250.688080, whole genome shotgun sequence (138917 bp)
Overview 1 RT 1: 50627-58942 bp Neighborhood of RT #1 [50627, 58998] PRK07232 MrcA RVT_N RVT-GII YkfC HNH PilM PilN Feature: gene Location: 50627-51904 bp Feature: domain Description: PRK07232 Location: 50645-51854 bp Feature: domain Description: PRK072 32 Location: 50645-51854 bp Feature: gene Location: 52083-54611 bp Feature: domain Description: MrcA Location: 52164-54537 bp Feature: domain Description: MrcA Location: 52 164-54537 bp Feature: gene Location: 54665-56371 bp Feature: RT Description: RVT_N Location: 54722-54965 bp Feature: RT Description: RVT_N Location: 5472 2 -54965 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55010-55646 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55010-55646 bp Feature: domain Description: YkfC Location: 55844-55997 bp Feature: domain Description: YkfC Location: 55844-55997 bp Feature: domain Description: HNH Note: nucleases Location: 56183-56321 bp Feature: domain Description: HNH Note: nucleases Location: 56183-5632 1 bp Feature: gene Location: 57584-58465 bp Feature: domain Description: PilM Location: 57587-58118 bp Feature: domain Description: PilM Location: 57587-58118 bp Feature: gene Location: 58462-58998 bp Feature: domain Description: PilN Location: 58465-58942 bp Feature: domain Description: PilN Location: 58465-58942 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK07232 (bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed), MrcA (COG5009), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), PilM (pfam07419), PilN (pfam05137)

Seq: VCPS01000017.1 Pseudomonas putida strain TT322 NODE_17_length_112720_cov_232.139174, whole genome shotgun sequence (112720 bp)
Overview 1 RT 1: 37215-43852 bp Neighborhood of RT #1 [37215, 43852] TPR TPR TPR TPR TPR_19 IS5 RVT-GII GIIM IS5 Feature: gene Location: 37215-38936 bp Feature: domain Description: TPR Location: 37575-37842 bp Feature: domain Description: TPR Location: 3 7575-3 7842 bp Feature: domain Description: TPR Location: 37884-38031 bp Feature: domain Description: TPR Location: 3 7884-3 803 1 bp Feature: domain Description: TPR Location: 38076-38355 bp Feature: domain Description: TPR Location: 3 8076-3 83 55 bp Feature: domain Description: TPR Location: 38403-38616 bp Feature: domain Description: TPR Location: 3 8403 -3 8616 bp Feature: domain Description: TPR_19 Location: 38730-38889 bp Feature: domain Description: TPR_19 Location: 3 873 0-3 8889 bp Feature: gene Location: 39373-39915 bp Feature: domain Description: IS5 Location: 39559-39892 bp Feature: domain Description: IS5 Location: 3 9559-3 9892 bp Feature: gene Location: 40410-41663 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40623-41280 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40623 -41280 bp Feature: domain Description: GIIM Note: maturase Location: 41358-41580 bp Feature: domain Description: GIIM Note: maturase Location: 413 58-41580 bp Feature: gene Location: 41749-42207 bp Feature: domain Description: IS5 Location: 41752-42184 bp Feature: domain Description: IS5 Location: 41752-42184 bp Feature: gene Location: 42875-43852 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TPR (smart00028), TPR_19 (pfam14559), IS5 (COG3039), RVT-GII, GIIM (pfam08388)