myRT

myRT report for GCA_013377605.1_ASM1337760v1

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Seq: JABXYE010000045.1 Photobacterium damselae subsp. damselae strain CDC-1421-81 Contig_000045, whole genome shotgun sequence (82107 bp)
Overview 1 RT 1: 43628-51049 bp Neighborhood of RT #1 [43628, 51147] Methyltransf_23 RVT-UG2 COG0610 RMtype1_S_EcoKI-TRD2-CR2_like RMtype1_S_EcoKI-TRD2-CR2_like Feature: gene Location: 43628-44212 bp Feature: domain Description: Methyltransf_23 Location: 43670-44027 bp Feature: domain Description: Methyltransf_23 Location: 43670-44027 bp Feature: gene Location: 44671-44886 bp Feature: gene Location: 45236-46837 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 45593-46535 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 45593-46535 bp Feature: gene Location: 46868-50116 bp Feature: domain Description: COG0610 Location: 46901-50033 bp Feature: domain Description: COG061 0 Location: 46901 -50033 bp Feature: gene Location: 50113-51147 bp Feature: domain Description: RMtype1_S_EcoKI-TRD2-CR2_like Location: 50203-50377 bp Feature: domain Description: RMtype1 _S_EcoKI-TRD2-CR2_like Location: 50203-50377 bp Feature: domain Description: RMtype1_S_EcoKI-TRD2-CR2_like Location: 50467-51049 bp Feature: domain Description: RMtype1 _S_EcoKI-TRD2-CR2_like Location: 50467-51 049 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Methyltransf_23 (pfam13489), RVT-UG2, COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), RMtype1_S_EcoKI-TRD2-CR2_like (cd17261)

Seq: JABXYE010000056.1 Photobacterium damselae subsp. damselae strain CDC-1421-81 Contig_000056, whole genome shotgun sequence (116584 bp)
Overview 1 RT 1: 19851-27089 bp Neighborhood of RT #1 [19851, 27127] PRK00378 RVT-UG15 SLC6sbd_u1 Feature: gene Location: 19851-21128 bp Feature: gene Location: 21130-22131 bp Feature: domain Description: PRK00378 Location: 21133-22120 bp Feature: domain Description: PRK00378 Location: 2 1133-2 2 12 0 bp Feature: gene Location: 22691-24316 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 23087-23483 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 2 3087-2 3483 bp Feature: gene Location: 24330-24698 bp Feature: gene Location: 25646-27127 bp Feature: domain Description: SLC6sbd_u1 Location: 25655-27089 bp Feature: domain Description: SLC6sbd_u1 Location: 2 5655-2 7089 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK00378 (nucleoid-associated protein NdpA; Validated), RVT-UG15, SLC6sbd_u1 (cd10334)

Seq: JABXYE010000064.1 Photobacterium damselae subsp. damselae strain CDC-1421-81 Contig_000064, whole genome shotgun sequence (161475 bp)
Overview 1 RT 1: 1-5566 bp Neighborhood of RT #1 [1, 5631] SH3_3 RVT-UG5 HTH_XRE Feature: gene Location: 1-723 bp Feature: domain Description: SH3_3 Location: 544-709 bp Feature: domain Description: SH3 _3 Location: 544-709 bp Feature: gene Location: 742-915 bp Feature: gene Location: 1403-4615 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1934-2432 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 193 4-243 2 bp Feature: gene Location: 4632-5084 bp Feature: gene Location: 5398-5631 bp Feature: domain Description: HTH_XRE Location: 5404-5566 bp Feature: domain Description: HTH_XRE Location: 5404-5566 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SH3_3 (pfam08239), RVT-UG5, HTH_XRE (smart00530)

Seq: JABXYE010000071.1 Photobacterium damselae subsp. damselae strain CDC-1421-81 Contig_000071, whole genome shotgun sequence (24275 bp)
Overview 1 RT 1: 6849-11834 bp Neighborhood of RT #1 [6849, 11834] SSL2 RVT-Retrons Feature: gene Location: 6849-7394 bp Feature: gene Location: 7499-8770 bp Feature: domain Description: SSL2 Location: 7718-8489 bp Feature: domain Description: SSL2 Location: 7718-84 89 bp Feature: gene Location: 9347-11212 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9482-10199 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 94 82-10199 bp Feature: gene Location: 11246-11416 bp Feature: gene Location: 11640-11834 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SSL2 (COG1061), RVT-Retrons

Seq: JABXYE010000077.1 Photobacterium damselae subsp. damselae strain CDC-1421-81 Contig_000077, whole genome shotgun sequence (234567 bp)
Overview 1 RT 1: 211455-215930 bp Neighborhood of RT #1 [211455, 216694] DNA_RNApol_7kD DNA_RNApol_7kD RVT-UG12 RES pfam00656 Feature: gene Location: 211455-211691 bp Feature: domain Description: DNA_RNApol_7kD Location: 211479-211503 bp Feature: domain Description: DNA_RNApol_7kD Location: 211479-2115 03 bp Feature: domain Description: DNA_RNApol_7kD Location: 211530-211578 bp Feature: domain Description: DNA_RNApol_7kD Location: 2115 30-2115 78 bp Feature: gene Location: 211688-212155 bp Feature: gene Location: 212201-213811 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 212558-212993 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 2125 5 8-212993 bp Feature: gene Location: 213932-214696 bp Feature: domain Description: RES Location: 214217-214613 bp Feature: domain Description: RES Location: 214217-214613 bp Feature: gene Location: 215267-216694 bp Feature: domain Description: pfam00656 Location: 215279-215930 bp Feature: domain Description: pfam0065 6 Location: 215 279-215 930 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DNA_RNApol_7kD (pfam03604), RVT-UG12, RES (smart00953), pfam00656 (Peptidase_C14;Caspase domain)