myRT

myRT report for GCA_013385335.1_ASM1338533v1

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Seq: JACAQF010000021.1 Pseudomonas agarici strain IPO3739 IPO_3739_S24_L002_contig_22, whole genome shotgun sequence (233092 bp)
Overview 1 RT 1: 162073-169817 bp Neighborhood of RT #1 [162073, 169822] DotA_TraY RVT-Retrons INT_Rci_Hp1_C PRK05408 Feature: gene Location: 162073-164337 bp Feature: domain Description: DotA_TraY Location: 162184-164116 bp Feature: domain Description: DotA_TraY Location: 1 621 84-1 641 1 6 bp Feature: gene Location: 165448-165675 bp Feature: gene Location: 166197-167933 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 166371-166968 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 66371 -1 66968 bp Feature: gene Location: 168156-169274 bp Feature: domain Description: INT_Rci_Hp1_C Location: 168693-169197 bp Feature: domain Description: INT_Rci_Hp1 _C Location: 1 68693-1 691 97 bp Feature: gene Location: 169550-169822 bp Feature: domain Description: PRK05408 Location: 169553-169817 bp Feature: domain Description: PRK05408 Location: 1 69553-1 6981 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DotA_TraY (TIGR04346), RVT-Retrons, INT_Rci_Hp1_C (cd00796), PRK05408 (oxidative damage protection protein; Provisional)

Seq: JACAQF010000004.1 Pseudomonas agarici strain IPO3739 IPO_3739_S24_L002_contig_5, whole genome shotgun sequence (341182 bp)
Overview 1 RT 1: 122779-129257 bp 2 RT 2: 149654-151552 bp Neighborhood of RT #1 [122779, 129310] LysR HTH_28 RVT-UG2 COG4951 SSL2 Neighborhood of RT #2 [149654, 151552] RVT-Retrons Feature: gene Location: 122779-123666 bp Feature: domain Description: LysR Location: 122785-123643 bp Feature: domain Description: LysR Location: 12 2 785-12 3643 bp Feature: gene Location: 123760-124446 bp Feature: domain Description: HTH_28 Location: 123769-123865 bp Feature: domain Description: HTH_2 8 Location: 12 3769-12 3865 bp Feature: gene Location: 124896-126173 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 125088-125874 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 12 5088-12 5874 bp Feature: gene Location: 126634-126789 bp Feature: gene Location: 126812-129310 bp Feature: domain Description: COG4951 Location: 126929-128069 bp Feature: domain Description: COG4951 Location: 12 692 9-12 8069 bp Feature: domain Description: SSL2 Location: 128147-129257 bp Feature: domain Description: SSL2 Location: 12 8147-12 92 57 bp Feature: gene Location: 149654-149953 bp Feature: gene Location: 149965-150123 bp Feature: gene Location: 150148-151017 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 150283-150853 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1502 83-150853 bp Feature: gene Location: 151093-151347 bp Feature: gene Location: 151346-151552 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LysR (COG0583), HTH_28 (pfam13518), RVT-UG2, COG4951 (Uncharacterized protein ), SSL2 (COG1061), RVT-Retrons

Seq: JACAQF010000061.1 Pseudomonas agarici strain IPO3739 IPO_3739_S24_L002_contig_64, whole genome shotgun sequence (1913 bp)
Overview 1 RT 1: 59-1463 bp Neighborhood of RT #1 [59, 1855] RVT-GII Feature: gene Location: 59-1855 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 773-1463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 773 -1463 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII