myRT

myRT report for GCA_013385965.1_ASM1338596v1

Download annotations/find similar RTs

Seq: JACAOZ010000012.1 Pseudomonas edaphica strain B7002 run0228_B7002_S27_L005_contig_12, whole genome shotgun sequence (361579 bp)
Overview 1 RT 1: 276192-283473 bp Neighborhood of RT #1 [276192, 283473] DUF3732 RVT-Retrons Integrase_1 Feature: gene Location: 276192-277019 bp Feature: gene Location: 277468-279297 bp Feature: domain Description: DUF3732 Location: 278785-279289 bp Feature: domain Description: DUF3732 Location: 278785-279289 bp Feature: gene Location: 279627-281378 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 279756-280383 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 279756-280383 bp Feature: gene Location: 281933-282913 bp Feature: domain Description: Integrase_1 Location: 282317-282755 bp Feature: domain Description: Integrase_1 Location: 28231 7-282755 bp Feature: gene Location: 282916-283473 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3732 (pfam12532), RVT-Retrons, Integrase_1 (pfam12835)

Seq: JACAOZ010000038.1 Pseudomonas edaphica strain B7002 run0228_B7002_S27_L005_contig_38, whole genome shotgun sequence (11216 bp)
Overview 1 RT 1: 380-4536 bp Neighborhood of RT #1 [380, 4562] DDE_Tnp_IS66 RVT-GII CblD EAL Feature: gene Location: 380-535 bp Feature: gene Location: 620-757 bp Feature: domain Description: DDE_Tnp_IS66 Location: 623-710 bp Feature: domain Description: DDE_Tnp_IS66 Location: 62 3-710 bp Feature: gene Location: 846-2204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1116-1806 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1116-1806 bp Feature: gene Location: 2438-3583 bp Feature: domain Description: CblD Location: 2531-3572 bp Feature: domain Description: CblD Location: 2 531-3572 bp Feature: gene Location: 3744-4562 bp Feature: domain Description: EAL Location: 3795-4536 bp Feature: domain Description: EAL Location: 3795-4536 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CblD (pfam07434), EAL (smart00052), DDE_Tnp_IS66 (pfam03050), RVT-GII