myRT

myRT report for GCA_013386215.1_ASM1338621v1

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Seq: JACASD010000103.1 Pseudomonas reactans strain P8021 P8021_S16_L001_contig_105, whole genome shotgun sequence (66416 bp)
Overview 1 RT 1: 17133-21652 bp Neighborhood of RT #1 [17133, 21652] conj_TOL_TraD conj_conj_conj_TIGR03747 RVT-GII EAL Feature: gene Location: 17133-19304 bp Feature: domain Description: conj_TOL_TraD Location: 17154-19104 bp Feature: domain Description: conj_TOL_TraD Location: 1 71 54-1 91 04 bp Feature: gene Location: 19301-20050 bp Feature: domain Description: conj_conj_conj_TIGR03747 Location: 19349-20048 bp Feature: domain Description: conj_conj_conj_TIGR03747 Location: 1 9349-20048 bp Feature: gene Location: 20153-21358 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20339-20966 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20339-20966 bp Feature: gene Location: 21174-21428 bp Feature: domain Description: EAL Location: 21177-21381 bp Feature: domain Description: EAL Location: 21 1 77-21 381 bp Feature: gene Location: 21458-21652 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT conj_TOL_TraD (TIGR03754), conj_conj_conj_TIGR03747, RVT-GII, EAL (smart00052)

Seq: JACASD010000120.1 Pseudomonas reactans strain P8021 P8021_S16_L001_contig_123, whole genome shotgun sequence (6546 bp)
Overview 1 RT 1: 134-4111 bp Neighborhood of RT #1 [134, 4111] RVT-Retrons HTH_23 DDE_3 Feature: gene Location: 134-892 bp Feature: gene Location: 882-2003 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 960-1551 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 960-1551 bp Feature: gene Location: 2660-3751 bp Feature: domain Description: HTH_23 Location: 2750-2888 bp Feature: domain Description: HTH_2 3 Location: 2 750-2 888 bp Feature: domain Description: DDE_3 Location: 3176-3614 bp Feature: domain Description: DDE_3 Location: 3176-3614 bp Feature: gene Location: 3878-4111 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, HTH_23 (pfam13384), DDE_3 (pfam13358)

Seq: JACASD010000015.1 Pseudomonas reactans strain P8021 P8021_S16_L001_contig_15, whole genome shotgun sequence (104076 bp)
Overview 1 RT 1: 55009-58791 bp Neighborhood of RT #1 [55009, 58791] COG3981 RVT-UG7 Feature: gene Location: 55009-55206 bp Feature: gene Location: 55148-55630 bp Feature: domain Description: COG3981 Location: 55370-55541 bp Feature: domain Description: COG3 981 Location: 553 70-55541 bp Feature: gene Location: 56626-58236 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 57019-57442 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 57019-57442 bp Feature: gene Location: 58382-58537 bp Feature: gene Location: 58633-58791 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3981 (Predicted acetyltransferase ), RVT-UG7

Seq: JACASD010000071.1 Pseudomonas reactans strain P8021 P8021_S16_L001_contig_72, whole genome shotgun sequence (37323 bp)
Overview 1 RT 1: 23544-31969 bp Neighborhood of RT #1 [23544, 31971] 23dbph12diox FAD_binding_3 PRK06184 RVT-GII GIIM biphenyl_bphD DUF1302 Feature: gene Location: 23544-24437 bp Feature: domain Description: 23dbph12diox Location: 23550-24420 bp Feature: domain Description: 23dbph12diox Location: 23550-24 4 20 bp Feature: gene Location: 24753-26513 bp Feature: domain Description: FAD_binding_3 Location: 24771-25866 bp Feature: domain Description: FAD_binding_3 Location: 24 771-25866 bp Feature: domain Description: PRK06184 Location: 26241-26478 bp Feature: domain Description: PRK06184 Location: 2624 1-264 78 bp Feature: gene Location: 26989-28440 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27376-27991 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27376-27991 bp Feature: domain Description: GIIM Note: maturase Location: 28048-28273 bp Feature: domain Description: GIIM Note: maturase Location: 2804 8-28273 bp Feature: gene Location: 29265-30122 bp Feature: domain Description: biphenyl_bphD Location: 29277-30120 bp Feature: domain Description: biphenyl_bphD Location: 29277-30120 bp Feature: gene Location: 30217-31971 bp Feature: domain Description: DUF1302 Location: 30376-31969 bp Feature: domain Description: DUF1302 Location: 30376-31969 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT 23dbph12diox (TIGR03213), FAD_binding_3 (pfam01494), PRK06184 (hypothetical protein; Provisional), RVT-GII, GIIM (pfam08388), biphenyl_bphD (TIGR03343), DUF1302 (pfam06980)