myRT

myRT report for GCA_013386345.1_ASM1338634v1

Download annotations/find similar RTs

Seq: JACARX010000102.1 Pseudomonas veronii strain P7772 mar-12-p-veronii_S20_L001_contig_102, whole genome shotgun sequence (4062 bp)
Overview 1 RT 1: 415-3950 bp Neighborhood of RT #1 [415, 4060] TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 RVT_N RVT-GII GIIM Feature: gene Location: 415-750 bp Feature: domain Description: TnpB_IS66 Location: 433-721 bp Feature: domain Description: TnpB_IS66 Location: 433-721 bp Feature: gene Location: 812-2140 bp Feature: domain Description: LZ_Tnp_IS66 Location: 938-1157 bp Feature: domain Description: LZ_Tnp_IS66 Location: 938-1 1 57 bp Feature: domain Description: zf-IS66 Location: 1178-1304 bp Feature: domain Description: zf-IS66 Location: 1 1 78-1 304 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1346-2120 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 346-21 20 bp Feature: gene Location: 2696-4060 bp Feature: RT Description: RVT_N Location: 2741-2984 bp Feature: RT Description: RVT_N Location: 2741 -2984 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3029-3665 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3029-3665 bp Feature: domain Description: GIIM Note: maturase Location: 3722-3950 bp Feature: domain Description: GIIM Note: maturase Location: 3722-3950 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TnpB_IS66 (pfam05717), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050)

Seq: JACARX010000109.1 Pseudomonas veronii strain P7772 mar-12-p-veronii_S20_L001_contig_109, whole genome shotgun sequence (30146 bp)
Overview 1 RT 1: 3-3632 bp Neighborhood of RT #1 [3, 3632] ABC_ATPase RVT-Retrons Feature: gene Location: 3-1067 bp Feature: domain Description: ABC_ATPase Location: 72-783 bp Feature: domain Description: ABC_ATPase Location: 72 -783 bp Feature: gene Location: 1072-2025 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1186-1750 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1186-1750 bp Feature: gene Location: 3208-3441 bp Feature: gene Location: 3453-3632 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, ABC_ATPase (pfam09818)

Seq: JACARX010000240.1 Pseudomonas veronii strain P7772 mar-12-p-veronii_S20_L001_contig_250, whole genome shotgun sequence (899 bp)
Overview 1 RT 1: 1-898 bp Neighborhood of RT #1 [1, 897] RVT_N RVT-GII Feature: gene Location: 1-897 bp Feature: RT Description: RVT_N Location: 19-262 bp Feature: RT Description: RVT_N Location: 19-262 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 307-898 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 07-898 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII