myRT

myRT report for GCA_013386405.1_ASM1338640v1

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Seq: JACARV010000151.1 Pseudomonas putida strain P7765 T2-6-P-putido_S13_L001_contig_158, whole genome shotgun sequence (1933 bp)
Overview 1 RT 1: 3-1693 bp Neighborhood of RT #1 [3, 1860] RVT-GII GIIM Feature: gene Location: 3-599 bp Feature: gene Location: 604-1860 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 796-1411 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 796-1 41 1 bp Feature: domain Description: GIIM Note: maturase Location: 1468-1693 bp Feature: domain Description: GIIM Note: maturase Location: 1 468-1 693 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JACARV010000053.1 Pseudomonas putida strain P7765 T2-6-P-putido_S13_L001_contig_57, whole genome shotgun sequence (54755 bp)
Overview 1 RT 1: 1083-6250 bp Neighborhood of RT #1 [1083, 6250] LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C NTP_transf_6 RVT-GII Feature: gene Location: 1083-2531 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1131-1344 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1131-1344 bp Feature: domain Description: zf-IS66 Location: 1365-1494 bp Feature: domain Description: zf-IS66 Location: 1365-1494 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1536-2379 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1536-2 379 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2400-2514 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2 400-2 514 bp Feature: gene Location: 2611-3138 bp Feature: domain Description: NTP_transf_6 Location: 2623-3097 bp Feature: domain Description: NTP_transf_6 Location: 2 62 3-3097 bp Feature: gene Location: 3206-5002 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3920-4610 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 392 0-4610 bp Feature: gene Location: 5231-6214 bp Feature: gene Location: 5837-6250 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), NTP_transf_6 (pfam06042), RVT-GII

Seq: JACARV010000055.1 Pseudomonas putida strain P7765 T2-6-P-putido_S13_L001_contig_59, whole genome shotgun sequence (161583 bp)
Overview 1 RT 1: 81008-87626 bp Neighborhood of RT #1 [81008, 87769] flgL KAS_III RVT-GII Nudix_Hydrolase_6 DUF772 IS5 RVT-GII GIIM IS5 COG3547 Feature: gene Location: 81008-82573 bp Feature: domain Description: flgL Location: 81011-82571 bp Feature: domain Description: flgL Location: 81011-82571 bp Feature: gene Location: 82844-83773 bp Feature: domain Description: KAS_III Location: 82850-83762 bp Feature: domain Description: KAS_III Location: 82850-83 762 bp Feature: gene Location: 83883-84383 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83889-84132 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83 889-8413 2 bp Feature: domain Description: Nudix_Hydrolase_6 Location: 84159-84324 bp Feature: domain Description: Nudix_Hydrolase_6 Location: 84159-843 24 bp Feature: gene Location: 84463-84708 bp Feature: domain Description: DUF772 Location: 84613-84703 bp Feature: domain Description: DUF772 Location: 84613 -84703 bp Feature: gene Location: 84718-85005 bp Feature: domain Description: IS5 Location: 84721-84982 bp Feature: domain Description: IS5 Location: 84721-84982 bp Feature: gene Location: 85500-86753 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 85713-86370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 85713 -863 70 bp Feature: domain Description: GIIM Note: maturase Location: 86448-86670 bp Feature: domain Description: GIIM Note: maturase Location: 86448-86670 bp Feature: gene Location: 86764-87285 bp Feature: domain Description: IS5 Location: 86836-87271 bp Feature: domain Description: IS5 Location: 8683 6-87271 bp Feature: gene Location: 87434-87769 bp Feature: domain Description: COG3547 Location: 87449-87626 bp Feature: domain Description: COG3 547 Location: 87449-87626 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT flgL (PRK12718), KAS_III (cd00830), RVT-GII, Nudix_Hydrolase_6 (cd04663), DUF772 (pfam05598), IS5 (COG3039), GIIM (pfam08388), COG3547 (Transposase )