myRT

myRT report for GCA_013386995.1_ASM1338699v1

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Seq: JACAQS010000010.1 Pseudomonas gingeri strain IPO3754 IPO_3754_S37_L003_contig_10, whole genome shotgun sequence (96539 bp)
Overview 1 RT 1: 58005-66934 bp Neighborhood of RT #1 [58005, 66963] PRK10770 LptD RVT_N RVT-GII GIIM HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 58005-59285 bp Feature: domain Description: PRK10770 Location: 58044-59253 bp Feature: domain Description: PRK1 0770 Location: 58044-59253 bp Feature: gene Location: 59302-62112 bp Feature: domain Description: LptD Location: 59746-62095 bp Feature: domain Description: LptD Location: 59746-62095 bp Feature: gene Location: 62256-63965 bp Feature: RT Description: RVT_N Location: 62313-62556 bp Feature: RT Description: RVT_N Location: 6231 3-62556 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62601-63237 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62601 -63237 bp Feature: domain Description: GIIM Note: maturase Location: 63291-63522 bp Feature: domain Description: GIIM Note: maturase Location: 63291 -63522 bp Feature: domain Description: HNH Note: nucleases Location: 63774-63912 bp Feature: domain Description: HNH Note: nucleases Location: 63774-6391 2 bp Feature: gene Location: 65267-66292 bp Feature: domain Description: COG3178 Location: 65291-66269 bp Feature: domain Description: COG31 78 Location: 65291 -66269 bp Feature: gene Location: 66289-66963 bp Feature: domain Description: NTP_transferase_like_1 Location: 66295-66934 bp Feature: domain Description: NTP_transferase_like_1 Location: 66295-66934 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)

Seq: JACAQS010000002.1 Pseudomonas gingeri strain IPO3754 IPO_3754_S37_L003_contig_2, whole genome shotgun sequence (860209 bp)
Overview 1 RT 1: 339829-343328 bp 2 RT 2: 401047-403741 bp 3 RT 3: 419202-424098 bp Neighborhood of RT #1 [339829, 343328] RVT-GII GIIM FACL_FadD13-like Neighborhood of RT #2 [401047, 403746] DUF4096 TnpB_IS66 RVT-GII TnpB_IS66 Neighborhood of RT #3 [419202, 424139] DDE_Tnp_IS66 RVT-GII SDR_c FACL_FadD13-like Feature: gene Location: 339829-339972 bp Feature: gene Location: 339956-340351 bp Feature: gene Location: 340536-341204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 340539-340983 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 340539-340983 bp Feature: domain Description: GIIM Note: maturase Location: 341061-341196 bp Feature: domain Description: GIIM Note: maturase Location: 341061-341196 bp Feature: gene Location: 341429-342994 bp Feature: domain Description: FACL_FadD13-like Location: 341459-342920 bp Feature: domain Description: FACL_FadD13-like Location: 341459-342 92 0 bp Feature: gene Location: 343200-343328 bp Feature: gene Location: 401047-401448 bp Feature: domain Description: DUF4096 Location: 401068-401281 bp Feature: domain Description: DUF4096 Location: 401068-4012 81 bp Feature: gene Location: 401571-401774 bp Feature: domain Description: TnpB_IS66 Location: 401601-401751 bp Feature: domain Description: TnpB_IS66 Location: 401601-401751 bp Feature: gene Location: 402286-403263 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 402490-403147 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 402 490-403147 bp Feature: gene Location: 403357-403554 bp Feature: gene Location: 403588-403746 bp Feature: domain Description: TnpB_IS66 Location: 403612-403741 bp Feature: domain Description: TnpB_IS66 Location: 403612 -403741 bp Feature: gene Location: 419202-419456 bp Feature: gene Location: 419471-419725 bp Feature: domain Description: DDE_Tnp_IS66 Location: 419474-419723 bp Feature: domain Description: DDE_Tnp_IS66 Location: 419474-41972 3 bp Feature: gene Location: 420416-420862 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 420617-420851 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42 0617-42 0851 bp Feature: gene Location: 421519-422280 bp Feature: domain Description: SDR_c Location: 421561-422251 bp Feature: domain Description: SDR_c Location: 42 1561-42 2 2 51 bp Feature: gene Location: 422598-424139 bp Feature: domain Description: FACL_FadD13-like Location: 422625-424098 bp Feature: domain Description: FACL_FadD13-like Location: 42 2 62 5-42 4098 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), FACL_FadD13-like (cd17631), DUF4096 (pfam13340), TnpB_IS66 (pfam05717), DDE_Tnp_IS66 (pfam03050), SDR_c (cd05233)