myRT

myRT report for GCA_013389355.1_ASM1338935v1

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Seq: JACABR010000014.1 Escherichia coli strain NIFDS_EC2015_I58 NIFDS_EC2015_I58_contig14, whole genome shotgun sequence (125802 bp)
Overview 1 RT 1: 20800-28501 bp Neighborhood of RT #1 [20800, 28638] proA RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 20800-22053 bp Feature: domain Description: proA Location: 20827-22018 bp Feature: domain Description: proA Location: 20827-2201 8 bp Feature: gene Location: 22607-23077 bp Feature: gene Location: 23424-26633 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 23952-24441 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 23952-24441 bp Feature: domain Description: nitrilase Location: 25947-26544 bp Feature: domain Description: nitrilase Location: 25947-26544 bp Feature: gene Location: 26928-27731 bp Feature: domain Description: AbiEi_3_N Location: 26961-27222 bp Feature: domain Description: AbiEi_3_N Location: 26961 -27222 bp Feature: domain Description: AbiEi_3 Location: 27234-27690 bp Feature: domain Description: AbiEi_3 Location: 27234-27690 bp Feature: gene Location: 27718-28638 bp Feature: domain Description: AbiEii Location: 27760-28501 bp Feature: domain Description: AbiEii Location: 27760-28501 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT proA (TIGR00407), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)

Seq: JACABR010000046.1 Escherichia coli strain NIFDS_EC2015_I58 NIFDS_EC2015_I58_contig46, whole genome shotgun sequence (13170 bp)
Overview 1 RT 1: 3593-8252 bp Neighborhood of RT #1 [3593, 8317] COG3547 RVT-GII GIIM PHA02517 Feature: gene Location: 3593-3766 bp Feature: gene Location: 4159-5235 bp Feature: domain Description: COG3547 Location: 4198-5119 bp Feature: domain Description: COG3547 Location: 4198-5119 bp Feature: gene Location: 5777-7300 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6050-6782 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6050-6782 bp Feature: domain Description: GIIM Note: maturase Location: 6857-7055 bp Feature: domain Description: GIIM Note: maturase Location: 6857-7055 bp Feature: gene Location: 7254-7679 bp Feature: gene Location: 7892-8317 bp Feature: domain Description: PHA02517 Location: 7913-8252 bp Feature: domain Description: PHA02 517 Location: 7913-82 52 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)