myRT

myRT report for GCA_013390565.1_ASM1339056v1

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Seq: JACATZ010000001.1 Chloroflexi bacterium isolate L227-S17 MAG8_1, whole genome shotgun sequence (3291741 bp)
Overview 1 RT 1: 1768257-1776638 bp 2 RT 2: 2932564-2939423 bp Neighborhood of RT #1 [1768257, 1776638] DDE_5 COG3464 RVT-GII Intron_maturas2 HNHc HTH_7 COG3464 RVT-CRISPR-like recomb_XerC Neighborhood of RT #2 [2932564, 2939440] COG3903 TPR_12 TPR_12 CitB COG3464 RVT-GII Intron_maturas2 HNHc HTH_7 COG3464 Feature: gene Location: 1768257-1769576 bp Feature: domain Description: DDE_5 Location: 1768296-1768986 bp Feature: domain Description: DDE_5 Location: 1 768296-1 768986 bp Feature: gene Location: 1769934-1770686 bp Feature: domain Description: COG3464 Location: 1770012-1770633 bp Feature: domain Description: COG3464 Location: 1 77001 2-1 770633 bp Feature: gene Location: 1771187-1772998 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1771448-1772240 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 771 448-1 772240 bp Feature: domain Description: Intron_maturas2 Location: 1772381-1772618 bp Feature: domain Description: Intron_maturas2 Location: 1 772381 -1 77261 8 bp Feature: domain Description: HNHc Note: nucleases Location: 1772771-1772945 bp Feature: domain Description: HNHc Note: nucleases Location: 1 772771 -1 772945 bp Feature: gene Location: 1773135-1773560 bp Feature: domain Description: HTH_7 Location: 1773384-1773474 bp Feature: domain Description: HTH_7 Location: 1 773384-1 773474 bp Feature: gene Location: 1773636-1774178 bp Feature: domain Description: COG3464 Location: 1773798-1774161 bp Feature: domain Description: COG3464 Location: 1 773798-1 7741 61 bp Feature: gene Location: 1774267-1774584 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 1774372-1774483 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 1 774372-1 774483 bp Feature: gene Location: 1775412-1776392 bp Feature: domain Description: recomb_XerC Location: 1775616-1776336 bp Feature: domain Description: recomb_XerC Location: 1 77561 6-1 776336 bp Feature: gene Location: 1776405-1776638 bp Feature: gene Location: 2932564-2934921 bp Feature: domain Description: COG3903 Location: 2932636-2933893 bp Feature: domain Description: COG3903 Location: 2932636-2933893 bp Feature: domain Description: TPR_12 Location: 2933929-2934148 bp Feature: domain Description: TPR_1 2 Location: 2933929-29341 48 bp Feature: domain Description: TPR_12 Location: 2934169-2934364 bp Feature: domain Description: TPR_1 2 Location: 29341 69-2934364 bp Feature: domain Description: CitB Location: 2934661-2934910 bp Feature: domain Description: CitB Location: 2934661 -293491 0 bp Feature: gene Location: 2935196-2935948 bp Feature: domain Description: COG3464 Location: 2935274-2935895 bp Feature: domain Description: COG3464 Location: 2935274-2935895 bp Feature: gene Location: 2936449-2938260 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2936710-2937502 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 293671 0-2937502 bp Feature: domain Description: Intron_maturas2 Location: 2937643-2937880 bp Feature: domain Description: Intron_maturas2 Location: 2937643-2937880 bp Feature: domain Description: HNHc Note: nucleases Location: 2938033-2938207 bp Feature: domain Description: HNHc Note: nucleases Location: 2938033-2938207 bp Feature: gene Location: 2938397-2938822 bp Feature: domain Description: HTH_7 Location: 2938646-2938736 bp Feature: domain Description: HTH_7 Location: 2938646-2938736 bp Feature: gene Location: 2938898-2939440 bp Feature: domain Description: COG3464 Location: 2939060-2939423 bp Feature: domain Description: COG3464 Location: 2939060-2939423 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_5 (pfam13546), COG3464 (Transposase ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), HTH_7 (pfam02796), RVT-CRISPR, recomb_XerC (TIGR02224), COG3903 (Predicted ATPase ), TPR_12 (pfam13424)
CitB (TIGR02484)

Seq: JACATZ010000002.1 Chloroflexi bacterium isolate L227-S17 MAG8_2, whole genome shotgun sequence (189753 bp)
Overview 1 RT 1: 164394-171417 bp Neighborhood of RT #1 [164394, 171417] CHAT HEAT_2 HEAT_2 TPR CHAT RVT_N RVT-GII GIIM HNHc Feature: gene Location: 164394-164579 bp Feature: domain Description: CHAT Location: 164400-164541 bp Feature: domain Description: CHAT Location: 164400-164541 bp Feature: gene Location: 164678-168847 bp Feature: domain Description: HEAT_2 Location: 165680-165866 bp Feature: domain Description: HEAT_2 Location: 165680-165866 bp Feature: domain Description: HEAT_2 Location: 165932-166175 bp Feature: domain Description: HEAT_2 Location: 165932 -166175 bp Feature: domain Description: TPR Location: 166472-166808 bp Feature: domain Description: TPR Location: 166472 -166808 bp Feature: domain Description: CHAT Location: 167918-168842 bp Feature: domain Description: CHAT Location: 167918-168842 bp Feature: gene Location: 168953-170638 bp Feature: domain Description: RVT_N Location: 169004-169250 bp Feature: domain Description: RVT_N Location: 169004-1692 50 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 169298-169937 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1692 98-169937 bp Feature: domain Description: GIIM Note: maturase Location: 170012-170246 bp Feature: domain Description: GIIM Note: maturase Location: 170012 -1702 46 bp Feature: domain Description: HNHc Note: nucleases Location: 170456-170609 bp Feature: domain Description: HNHc Note: nucleases Location: 170456-170609 bp Feature: gene Location: 170730-170966 bp Feature: gene Location: 171241-171417 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHAT (pfam12770), HEAT_2 (pfam13646), TPR (smart00028), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JACATZ010000003.1 Chloroflexi bacterium isolate L227-S17 MAG8_3, whole genome shotgun sequence (2409695 bp)
Overview 1 RT 1: 568486-574019 bp Neighborhood of RT #1 [568486, 574036] COG4279 COG3464 RVT-GII Intron_maturas2 HNHc HTH_7 COG3464 Feature: gene Location: 568486-569382 bp Feature: domain Description: COG4279 Location: 568561-569365 bp Feature: domain Description: COG4279 Location: 568561-5693 65 bp Feature: gene Location: 569792-570544 bp Feature: domain Description: COG3464 Location: 569870-570491 bp Feature: domain Description: COG3 464 Location: 569870-570491 bp Feature: gene Location: 571045-572856 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 571306-572098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5713 06-572098 bp Feature: domain Description: Intron_maturas2 Location: 572239-572476 bp Feature: domain Description: Intron_maturas2 Location: 57223 9-572476 bp Feature: domain Description: HNHc Note: nucleases Location: 572629-572803 bp Feature: domain Description: HNHc Note: nucleases Location: 572629-572803 bp Feature: gene Location: 572993-573418 bp Feature: domain Description: HTH_7 Location: 573242-573332 bp Feature: domain Description: HTH_7 Location: 573 242-573 3 3 2 bp Feature: gene Location: 573494-574036 bp Feature: domain Description: COG3464 Location: 573656-574019 bp Feature: domain Description: COG3 464 Location: 573 656-574019 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4279 (Uncharacterized conserved protein, contains Zn finger domain ), COG3464 (Transposase ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), HTH_7 (pfam02796)