myRT

myRT report for GCA_013392355.1_ASM1339235v1

Download annotations/find similar RTs

Seq: JAAEHV010000032.1 Escherichia coli strain BS68-A NODE_32_length_41618_cov_166.168195, whole genome shotgun sequence (41618 bp)
Overview 1 RT 1: 2-1608 bp Neighborhood of RT #1 [2, 1682] InsE RVT-GII RVT-GII group_II_RT_mat IS285 Feature: gene Location: 2-340 bp Feature: domain Description: InsE Location: 5-296 bp Feature: domain Description: InsE Location: 5-296 bp Feature: gene Location: 379-582 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 424-580 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 424-580 bp Feature: gene Location: 616-852 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 619-799 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 9-799 bp Feature: gene Location: 845-1057 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 848-1046 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 848-1 046 bp Feature: gene Location: 1200-1682 bp Feature: domain Description: IS285 Location: 1230-1608 bp Feature: domain Description: IS285 Location: 1 230-1 608 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, group_II_RT_mat (TIGR04416), IS285 (COG3328)

Seq: JAAEHV010000034.1 Escherichia coli strain BS68-A NODE_34_length_36089_cov_187.104187, whole genome shotgun sequence (36089 bp)
Overview 1 RT 1: 14448-18739 bp Neighborhood of RT #1 [14448, 18739] YesM RVT-GII GIIM RVT-GII Feature: gene Location: 14448-15710 bp Feature: domain Description: YesM Location: 14961-15702 bp Feature: domain Description: YesM Location: 14961-15702 bp Feature: gene Location: 15740-15910 bp Feature: gene Location: 16260-16781 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16266-16548 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 162 66-16548 bp Feature: domain Description: GIIM Note: maturase Location: 16596-16776 bp Feature: domain Description: GIIM Note: maturase Location: 16596-16776 bp Feature: gene Location: 16809-17348 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17139-17217 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17139-172 17 bp Feature: gene Location: 17379-17576 bp Feature: gene Location: 17834-18739 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388)

Seq: JAAEHV010000004.1 Escherichia coli strain BS68-A NODE_4_length_262174_cov_197.855115, whole genome shotgun sequence (262174 bp)
Overview 1 RT 1: 1-2722 bp Neighborhood of RT #1 [1, 2727] RVT-UG17 SLATT_5 PRK10597 Feature: gene Location: 1-249 bp Feature: gene Location: 357-1727 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 585-1191 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 585-1191 bp Feature: gene Location: 1705-2256 bp Feature: domain Description: SLATT_5 Location: 1711-2227 bp Feature: domain Description: SLATT_5 Location: 1711-2227 bp Feature: gene Location: 2479-2727 bp Feature: domain Description: PRK10597 Location: 2482-2722 bp Feature: domain Description: PRK10597 Location: 2482-2722 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG17, SLATT_5 (pfam18160), PRK10597 (DNA damage-inducible protein I; Provisional)

Seq: JAAEHV010000064.1 Escherichia coli strain BS68-A NODE_64_length_5451_cov_172.330480, whole genome shotgun sequence (5451 bp)
Overview 1 RT 1: 842-5450 bp Neighborhood of RT #1 [842, 5449] RVT-GII GIIM PAAR_1 Feature: gene Location: 842-1747 bp Feature: gene Location: 1760-2425 bp Feature: gene Location: 2869-4368 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3322-3979 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3322-3979 bp Feature: domain Description: GIIM Note: maturase Location: 4069-4276 bp Feature: domain Description: GIIM Note: maturase Location: 4 069-4 276 bp Feature: gene Location: 4756-4998 bp Feature: gene Location: 5042-5449 bp Feature: domain Description: PAAR_1 Location: 5234-5450 bp Feature: domain Description: PAAR_1 Location: 5234 -54 50 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PAAR_1 (cd14737)