myRT

myRT report for GCA_013392395.1_ASM1339239v1

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Seq: JAAEHX010000032.1 Escherichia coli strain BS92-A NODE_32_length_42879_cov_161.299472, whole genome shotgun sequence (42879 bp)
Overview 1 RT 1: 2-1608 bp Neighborhood of RT #1 [2, 1682] InsE RVT-GII RVT-GII group_II_RT_mat IS285 Feature: gene Location: 2-340 bp Feature: domain Description: InsE Location: 5-296 bp Feature: domain Description: InsE Location: 5-296 bp Feature: gene Location: 379-582 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 424-580 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 424-580 bp Feature: gene Location: 616-852 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 619-799 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 9-799 bp Feature: gene Location: 845-1057 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 848-1046 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 848-1 046 bp Feature: gene Location: 1200-1682 bp Feature: domain Description: IS285 Location: 1230-1608 bp Feature: domain Description: IS285 Location: 1 230-1 608 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, group_II_RT_mat (TIGR04416), IS285 (COG3328)

Seq: JAAEHX010000034.1 Escherichia coli strain BS92-A NODE_34_length_36089_cov_185.575114, whole genome shotgun sequence (36089 bp)
Overview 1 RT 1: 14448-18739 bp Neighborhood of RT #1 [14448, 18739] YesM RVT-GII GIIM RVT-GII Feature: gene Location: 14448-15710 bp Feature: domain Description: YesM Location: 14961-15702 bp Feature: domain Description: YesM Location: 14961-15702 bp Feature: gene Location: 15740-15910 bp Feature: gene Location: 16260-16781 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16266-16548 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 162 66-16548 bp Feature: domain Description: GIIM Note: maturase Location: 16596-16776 bp Feature: domain Description: GIIM Note: maturase Location: 16596-16776 bp Feature: gene Location: 16809-17348 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17139-17217 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17139-172 17 bp Feature: gene Location: 17379-17576 bp Feature: gene Location: 17834-18739 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388)

Seq: JAAEHX010000005.1 Escherichia coli strain BS92-A NODE_5_length_264944_cov_197.544994, whole genome shotgun sequence (264944 bp)
Overview 1 RT 1: 259766-262731 bp Neighborhood of RT #1 [259766, 262928] SLATT_5 RVT-UG17 Peptidase_S74 Feature: gene Location: 259766-259906 bp Feature: gene Location: 259919-260470 bp Feature: domain Description: SLATT_5 Location: 259925-260441 bp Feature: domain Description: SLATT_5 Location: 259925-260441 bp Feature: gene Location: 260448-261818 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 260676-261282 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 260676-261282 bp Feature: gene Location: 261926-262213 bp Feature: gene Location: 262224-262928 bp Feature: domain Description: Peptidase_S74 Location: 262572-262731 bp Feature: domain Description: Peptidase_S74 Location: 262572-26273 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), RVT-UG17, Peptidase_S74 (pfam13884)

Seq: JAAEHX010000066.1 Escherichia coli strain BS92-A NODE_66_length_5451_cov_163.258653, whole genome shotgun sequence (5451 bp)
Overview 1 RT 1: 842-5450 bp Neighborhood of RT #1 [842, 5449] RVT-GII GIIM PAAR_1 Feature: gene Location: 842-1747 bp Feature: gene Location: 1760-2425 bp Feature: gene Location: 2869-4368 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3322-3979 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3322-3979 bp Feature: domain Description: GIIM Note: maturase Location: 4069-4276 bp Feature: domain Description: GIIM Note: maturase Location: 4 069-4 276 bp Feature: gene Location: 4756-4998 bp Feature: gene Location: 5042-5449 bp Feature: domain Description: PAAR_1 Location: 5234-5450 bp Feature: domain Description: PAAR_1 Location: 5234 -54 50 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PAAR_1 (cd14737)