myRT

myRT report for GCA_013392445.1_ASM1339244v1

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Seq: JAAEHZ010000027.1 Escherichia coli strain BS116-A NODE_27_length_58363_cov_146.190526, whole genome shotgun sequence (58363 bp)
Overview 1 RT 1: 15939-18351 bp Neighborhood of RT #1 [15939, 18425] PHA02517 InsE RVT-GII RVT-GII group_II_RT_mat IS285 Feature: gene Location: 15939-16640 bp Feature: domain Description: PHA02517 Location: 15957-16635 bp Feature: domain Description: PHA0251 7 Location: 1 5957-1 6635 bp Feature: gene Location: 16781-17083 bp Feature: domain Description: InsE Location: 16784-17069 bp Feature: domain Description: InsE Location: 1 6784-1 7069 bp Feature: gene Location: 17122-17325 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17167-17323 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 71 67-1 7323 bp Feature: gene Location: 17359-17595 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17362-17542 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 7362-1 7542 bp Feature: gene Location: 17588-17800 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 17591-17789 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1 7591 -1 7789 bp Feature: gene Location: 17943-18425 bp Feature: domain Description: IS285 Location: 17973-18351 bp Feature: domain Description: IS285 Location: 1 7973-1 8351 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), RVT-GII, group_II_RT_mat (TIGR04416), IS285 (COG3328)

Seq: JAAEHZ010000033.1 Escherichia coli strain BS116-A NODE_33_length_36089_cov_174.535099, whole genome shotgun sequence (36089 bp)
Overview 1 RT 1: 14448-18739 bp Neighborhood of RT #1 [14448, 18739] YesM RVT-GII GIIM RVT-GII Feature: gene Location: 14448-15710 bp Feature: domain Description: YesM Location: 14961-15702 bp Feature: domain Description: YesM Location: 14961-15702 bp Feature: gene Location: 15740-15910 bp Feature: gene Location: 16260-16781 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16266-16548 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 162 66-16548 bp Feature: domain Description: GIIM Note: maturase Location: 16596-16776 bp Feature: domain Description: GIIM Note: maturase Location: 16596-16776 bp Feature: gene Location: 16809-17348 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17139-17217 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17139-172 17 bp Feature: gene Location: 17379-17576 bp Feature: gene Location: 17834-18739 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388)

Seq: JAAEHZ010000004.1 Escherichia coli strain BS116-A NODE_4_length_264847_cov_170.912781, whole genome shotgun sequence (264847 bp)
Overview 1 RT 1: 1920-5395 bp Neighborhood of RT #1 [1920, 5400] DUF4094 Peptidase_S74 RVT-UG17 SLATT_5 PRK10597 Feature: gene Location: 1920-2624 bp Feature: domain Description: DUF4094 Location: 1962-2052 bp Feature: domain Description: DUF4094 Location: 1962-2052 bp Feature: domain Description: Peptidase_S74 Location: 2268-2427 bp Feature: domain Description: Peptidase_S74 Location: 2268-2427 bp Feature: gene Location: 2635-2922 bp Feature: gene Location: 3030-4400 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 3258-3864 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 3 258-3 864 bp Feature: gene Location: 4378-4929 bp Feature: domain Description: SLATT_5 Location: 4384-4900 bp Feature: domain Description: SLATT_5 Location: 43 84-4900 bp Feature: gene Location: 5152-5400 bp Feature: domain Description: PRK10597 Location: 5155-5395 bp Feature: domain Description: PRK10597 Location: 5155-53 95 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4094 (pfam13334), Peptidase_S74 (pfam13884), RVT-UG17, SLATT_5 (pfam18160), PRK10597 (DNA damage-inducible protein I; Provisional)

Seq: JAAEHZ010000062.1 Escherichia coli strain BS116-A NODE_62_length_5451_cov_151.622441, whole genome shotgun sequence (5451 bp)
Overview 1 RT 1: 842-5450 bp Neighborhood of RT #1 [842, 5449] RVT-GII GIIM PAAR_1 Feature: gene Location: 842-1747 bp Feature: gene Location: 1760-2425 bp Feature: gene Location: 2869-4368 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3322-3979 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3322-3979 bp Feature: domain Description: GIIM Note: maturase Location: 4069-4276 bp Feature: domain Description: GIIM Note: maturase Location: 4 069-4 276 bp Feature: gene Location: 4756-4998 bp Feature: gene Location: 5042-5449 bp Feature: domain Description: PAAR_1 Location: 5234-5450 bp Feature: domain Description: PAAR_1 Location: 5234 -54 50 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PAAR_1 (cd14737)