myRT

myRT report for GCA_013392485.1_ASM1339248v1

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Seq: JAAEIB010000021.1 Escherichia coli strain BS24-A NODE_21_length_78529_cov_144.588857, whole genome shotgun sequence (78529 bp)
Overview 1 RT 1: 56888-61179 bp Neighborhood of RT #1 [56888, 61179] YesM RVT-GII GIIM RVT-GII Feature: gene Location: 56888-58150 bp Feature: domain Description: YesM Location: 57401-58142 bp Feature: domain Description: YesM Location: 57401 -581 42 bp Feature: gene Location: 58180-58350 bp Feature: gene Location: 58700-59221 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58706-58988 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58706-58988 bp Feature: domain Description: GIIM Note: maturase Location: 59036-59216 bp Feature: domain Description: GIIM Note: maturase Location: 59036-5921 6 bp Feature: gene Location: 59249-59788 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59579-59657 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59579-59657 bp Feature: gene Location: 59819-60016 bp Feature: gene Location: 60274-61179 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388)

Seq: JAAEIB010000034.1 Escherichia coli strain BS24-A NODE_34_length_41620_cov_139.028380, whole genome shotgun sequence (41620 bp)
Overview 1 RT 1: 2-1608 bp Neighborhood of RT #1 [2, 1682] InsE RVT-GII RVT-GII group_II_RT_mat IS285 Feature: gene Location: 2-340 bp Feature: domain Description: InsE Location: 5-296 bp Feature: domain Description: InsE Location: 5-2 96 bp Feature: gene Location: 379-582 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 424-580 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42 4-580 bp Feature: gene Location: 616-852 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 619-799 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 619-799 bp Feature: gene Location: 845-1057 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 848-1046 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 848-1046 bp Feature: gene Location: 1200-1682 bp Feature: domain Description: IS285 Location: 1230-1608 bp Feature: domain Description: IS2 85 Location: 12 30-1608 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, group_II_RT_mat (TIGR04416), IS285 (COG3328)

Seq: JAAEIB010000005.1 Escherichia coli strain BS24-A NODE_5_length_262174_cov_162.599675, whole genome shotgun sequence (262174 bp)
Overview 1 RT 1: 259766-262171 bp Neighborhood of RT #1 [259766, 262171] SLATT_5 RVT-UG17 Feature: gene Location: 259766-259906 bp Feature: gene Location: 259919-260470 bp Feature: domain Description: SLATT_5 Location: 259925-260441 bp Feature: domain Description: SLATT_5 Location: 259925-260441 bp Feature: gene Location: 260448-261818 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 260676-261282 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 260676-261282 bp Feature: gene Location: 261926-262171 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), RVT-UG17

Seq: JAAEIB010000068.1 Escherichia coli strain BS24-A NODE_68_length_5451_cov_137.894678, whole genome shotgun sequence (5451 bp)
Overview 1 RT 1: 842-5450 bp Neighborhood of RT #1 [842, 5449] RVT-GII GIIM PAAR_1 Feature: gene Location: 842-1747 bp Feature: gene Location: 1760-2425 bp Feature: gene Location: 2869-4368 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3322-3979 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3322-3979 bp Feature: domain Description: GIIM Note: maturase Location: 4069-4276 bp Feature: domain Description: GIIM Note: maturase Location: 4 069-4 276 bp Feature: gene Location: 4756-4998 bp Feature: gene Location: 5042-5449 bp Feature: domain Description: PAAR_1 Location: 5234-5450 bp Feature: domain Description: PAAR_1 Location: 5234 -54 50 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PAAR_1 (cd14737)