myRT

myRT report for GCA_013392505.1_ASM1339250v1

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Seq: JAAEID010000034.1 Escherichia coli strain BS2-A NODE_34_length_42847_cov_172.805050, whole genome shotgun sequence (42847 bp)
Overview 1 RT 1: 92-2836 bp Neighborhood of RT #1 [92, 2910] HTH_38 Tra8 InsE RVT-GII RVT-GII group_II_RT_mat IS285 Feature: gene Location: 92-1243 bp Feature: domain Description: HTH_38 Location: 101-215 bp Feature: domain Description: HTH_38 Location: 1 01 -21 5 bp Feature: domain Description: Tra8 Location: 251-1232 bp Feature: domain Description: Tra8 Location: 251 -1 232 bp Feature: gene Location: 1200-1568 bp Feature: domain Description: InsE Location: 1203-1494 bp Feature: domain Description: InsE Location: 1 203-1 494 bp Feature: gene Location: 1607-1810 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1652-1808 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 652-1 808 bp Feature: gene Location: 1844-2080 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1847-2027 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 847-2027 bp Feature: gene Location: 2073-2285 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2076-2274 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2076-2274 bp Feature: gene Location: 2428-2910 bp Feature: domain Description: IS285 Location: 2458-2836 bp Feature: domain Description: IS285 Location: 2458-2836 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_38 (pfam13936), Tra8 (COG2826), InsE (COG2963), RVT-GII, group_II_RT_mat (TIGR04416), IS285 (COG3328)

Seq: JAAEID010000037.1 Escherichia coli strain BS2-A NODE_37_length_36080_cov_191.463211, whole genome shotgun sequence (36080 bp)
Overview 1 RT 1: 17342-21625 bp Neighborhood of RT #1 [17342, 21633] RVT-GII RVT-GII GIIM YesM Feature: gene Location: 17342-18247 bp Feature: gene Location: 18505-18702 bp Feature: gene Location: 18733-19272 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19063-19141 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19063-19141 bp Feature: gene Location: 19300-19821 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19306-19588 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19306-19588 bp Feature: domain Description: GIIM Note: maturase Location: 19636-19816 bp Feature: domain Description: GIIM Note: maturase Location: 19636-19816 bp Feature: gene Location: 20143-20331 bp Feature: gene Location: 20371-21633 bp Feature: domain Description: YesM Location: 20884-21625 bp Feature: domain Description: YesM Location: 2 0884-2 162 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YesM (COG2972)

Seq: JAAEID010000004.1 Escherichia coli strain BS2-A NODE_4_length_264847_cov_204.662398, whole genome shotgun sequence (264847 bp)
Overview 1 RT 1: 259766-262731 bp Neighborhood of RT #1 [259766, 262928] SLATT_5 RVT-UG17 DUF4094 Peptidase_S74 Feature: gene Location: 259766-259906 bp Feature: gene Location: 259919-260470 bp Feature: domain Description: SLATT_5 Location: 259925-260441 bp Feature: domain Description: SLATT_5 Location: 259925-260441 bp Feature: gene Location: 260448-261818 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 260676-261282 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 260676-261282 bp Feature: gene Location: 261926-262213 bp Feature: gene Location: 262224-262928 bp Feature: domain Description: DUF4094 Location: 262266-262356 bp Feature: domain Description: DUF4094 Location: 262266-2623 56 bp Feature: domain Description: Peptidase_S74 Location: 262572-262731 bp Feature: domain Description: Peptidase_S74 Location: 262572-26273 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), RVT-UG17, DUF4094 (pfam13334), Peptidase_S74 (pfam13884)

Seq: JAAEID010000061.1 Escherichia coli strain BS2-A NODE_61_length_5451_cov_172.117789, whole genome shotgun sequence (5451 bp)
Overview 1 RT 1: 842-5450 bp Neighborhood of RT #1 [842, 5449] RVT-GII GIIM PAAR_1 Feature: gene Location: 842-1747 bp Feature: gene Location: 1760-2425 bp Feature: gene Location: 2869-4368 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3322-3979 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3322-3979 bp Feature: domain Description: GIIM Note: maturase Location: 4069-4276 bp Feature: domain Description: GIIM Note: maturase Location: 4 069-4 276 bp Feature: gene Location: 4756-4998 bp Feature: gene Location: 5042-5449 bp Feature: domain Description: PAAR_1 Location: 5234-5450 bp Feature: domain Description: PAAR_1 Location: 5234 -54 50 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PAAR_1 (cd14737)