myRT

myRT report for GCA_013392745.1_ASM1339274v1

Download annotations/find similar RTs

Seq: SWAN01000022.1 Bradyrhizobium elkanii strain SEMIA 5019 S5019-16.1, whole genome shotgun sequence (171251 bp)
Overview 1 RT 1: 31592-37383 bp Neighborhood of RT #1 [31592, 38483] UbiE RVT-Retrons Trypsin_2 Piwi_piwi-like_ProArk SIR2 Feature: gene Location: 31592-32230 bp Feature: domain Description: UbiE Location: 31613-32027 bp Feature: domain Description: UbiE Location: 31 61 3-32027 bp Feature: gene Location: 32326-32649 bp Feature: gene Location: 33643-35241 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 33805-34402 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 33805-34402 bp Feature: domain Description: Trypsin_2 Location: 34759-35161 bp Feature: domain Description: Trypsin_2 Location: 34759-351 61 bp Feature: gene Location: 35323-36744 bp Feature: domain Description: Piwi_piwi-like_ProArk Location: 35368-36700 bp Feature: domain Description: Piwi_piwi-like_ProArk Location: 35368-36700 bp Feature: gene Location: 36741-38483 bp Feature: domain Description: SIR2 Location: 36816-37383 bp Feature: domain Description: SIR2 Location: 3681 6-37383 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UbiE (COG2226), RVT-Retrons, Trypsin_2 (pfam13365), Piwi_piwi-like_ProArk (cd04659), SIR2 (pfam02146)

Seq: SWAN01000176.1 Bradyrhizobium elkanii strain SEMIA 5019 S5019-161.1, whole genome shotgun sequence (4050 bp)
Overview 1 RT 1: 647-3647 bp Neighborhood of RT #1 [647, 4048] RVT-GII PHA00617 Resolvase Recombinase Zn_ribbon_recom Feature: gene Location: 647-865 bp Feature: gene Location: 996-1190 bp Feature: gene Location: 1232-1951 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1559-1949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1559-1949 bp Feature: gene Location: 2049-2378 bp Feature: domain Description: PHA00617 Location: 2175-2361 bp Feature: domain Description: PHA00617 Location: 2 175-2 361 bp Feature: gene Location: 2519-4048 bp Feature: domain Description: Resolvase Location: 2531-2972 bp Feature: domain Description: Resolvase Location: 2 531-2 972 bp Feature: domain Description: Recombinase Location: 3059-3419 bp Feature: domain Description: Recombinase Location: 3059-3419 bp Feature: domain Description: Zn_ribbon_recom Location: 3461-3647 bp Feature: domain Description: Zn_ribbon_recom Location: 3461-3647 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PHA00617 (ribbon-helix-helix domain containing protein), Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408)

Seq: SWAN01000195.1 Bradyrhizobium elkanii strain SEMIA 5019 S5019-179.1, whole genome shotgun sequence (2252 bp)
Overview 1 RT 1: 227-1496 bp Neighborhood of RT #1 [227, 1864] RVT-GII Feature: gene Location: 227-1864 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 803-1496 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 803 -1496 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: SWAN01000076.1 Bradyrhizobium elkanii strain SEMIA 5019 S5019-64.1, whole genome shotgun sequence (27104 bp)
Overview 1 RT 1: 537-4330 bp Neighborhood of RT #1 [537, 4330] PepP RVT-GII GIIM rve_3 Feature: gene Location: 537-731 bp Feature: gene Location: 851-1858 bp Feature: domain Description: PepP Location: 1001-1823 bp Feature: domain Description: PepP Location: 1001-1823 bp Feature: gene Location: 2941-3546 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2950-3166 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2950-3166 bp Feature: domain Description: GIIM Note: maturase Location: 3247-3472 bp Feature: domain Description: GIIM Note: maturase Location: 324 7-34 72 bp Feature: gene Location: 3634-3945 bp Feature: domain Description: rve_3 Location: 3640-3814 bp Feature: domain Description: rve_3 Location: 364 0-3814 bp Feature: gene Location: 3950-4330 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), rve_3 (pfam13683), PepP (COG0006)

Seq: SWAN01000081.1 Bradyrhizobium elkanii strain SEMIA 5019 S5019-67.1, whole genome shotgun sequence (33653 bp)
Overview 1 RT 1: 3673-6618 bp 2 RT 2: 12299-16777 bp Neighborhood of RT #1 [3673, 6618] RVT-GII RVT-GII DDE_Tnp_1_4 Neighborhood of RT #2 [12299, 16777] PHA02518 LomR RVT-GII GIIM DDE_Tnp_IS66 Feature: gene Location: 3673-4002 bp Feature: gene Location: 4072-4362 bp Feature: gene Location: 4496-4768 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4499-4757 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4499-475 7 bp Feature: gene Location: 4729-5487 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4747-5110 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4747-5 110 bp Feature: gene Location: 5586-6041 bp Feature: domain Description: DDE_Tnp_1_4 Location: 5622-5796 bp Feature: domain Description: DDE_Tnp_1_4 Location: 5 622-5 796 bp Feature: gene Location: 6214-6618 bp Feature: gene Location: 12299-12967 bp Feature: domain Description: PHA02518 Location: 12308-12905 bp Feature: domain Description: PHA025 18 Location: 12308-12905 bp Feature: gene Location: 13411-14247 bp Feature: domain Description: LomR Location: 13447-14158 bp Feature: domain Description: LomR Location: 13447-1415 8 bp Feature: gene Location: 14534-15511 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14540-15137 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 145 40-15 137 bp Feature: domain Description: GIIM Note: maturase Location: 15203-15425 bp Feature: domain Description: GIIM Note: maturase Location: 15 203-15 425 bp Feature: gene Location: 15748-16473 bp Feature: domain Description: DDE_Tnp_IS66 Location: 15766-16201 bp Feature: domain Description: DDE_Tnp_IS66 Location: 15 766-16201 bp Feature: gene Location: 16601-16777 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_1_4 (pfam13701), PHA02518 (ParA-like protein; Provisional), LomR (COG3637), GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050)