myRT

myRT report for GCA_013392765.1_ASM1339276v1

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Seq: SWAO01000023.1 Bradyrhizobium elkanii strain SEMIA 587 S587-11.1, whole genome shotgun sequence (129827 bp)
Overview 1 RT 1: 31576-37367 bp Neighborhood of RT #1 [31576, 38467] UbiE RVT-Retrons Trypsin_2 Piwi_piwi-like_ProArk SIR2 Feature: gene Location: 31576-32214 bp Feature: domain Description: UbiE Location: 31597-32011 bp Feature: domain Description: UbiE Location: 31 597-3201 1 bp Feature: gene Location: 32310-32633 bp Feature: gene Location: 33627-35225 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 33789-34386 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 33789-34386 bp Feature: domain Description: Trypsin_2 Location: 34743-35145 bp Feature: domain Description: Trypsin_2 Location: 34743-351 45 bp Feature: gene Location: 35307-36728 bp Feature: domain Description: Piwi_piwi-like_ProArk Location: 35352-36684 bp Feature: domain Description: Piwi_piwi-like_ProArk Location: 35352-36684 bp Feature: gene Location: 36725-38467 bp Feature: domain Description: SIR2 Location: 36800-37367 bp Feature: domain Description: SIR2 Location: 36800-37367 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UbiE (COG2226), RVT-Retrons, Trypsin_2 (pfam13365), Piwi_piwi-like_ProArk (cd04659), SIR2 (pfam02146)

Seq: SWAO01000224.1 Bradyrhizobium elkanii strain SEMIA 587 S587-181.1, whole genome shotgun sequence (6114 bp)
Overview 1 RT 1: 3-4543 bp Neighborhood of RT #1 [3, 4584] RVT-GII GIIM RVT-GII GIIM RVT-GII DUF772 Feature: gene Location: 3-164 bp Feature: gene Location: 204-467 bp Feature: gene Location: 711-1340 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 780-954 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 780-954 bp Feature: domain Description: GIIM Note: maturase Location: 1032-1260 bp Feature: domain Description: GIIM Note: maturase Location: 1032 -12 60 bp Feature: gene Location: 1348-2598 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1552-2209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1552 -2 2 09 bp Feature: domain Description: GIIM Note: maturase Location: 2290-2512 bp Feature: domain Description: GIIM Note: maturase Location: 2 2 90-2 512 bp Feature: gene Location: 2648-2881 bp Feature: gene Location: 3117-3890 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3375-3858 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3375-3858 bp Feature: gene Location: 3896-4036 bp Feature: gene Location: 4276-4584 bp Feature: domain Description: DUF772 Location: 4432-4543 bp Feature: domain Description: DUF772 Location: 4432 -4543 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DUF772 (pfam05598)

Seq: SWAO01000253.1 Bradyrhizobium elkanii strain SEMIA 587 S587-208.1, whole genome shotgun sequence (3546 bp)
Overview 1 RT 1: 468-3469 bp Neighborhood of RT #1 [468, 3543] PepP RVT-GII GIIM Feature: gene Location: 468-662 bp Feature: gene Location: 782-1789 bp Feature: domain Description: PepP Location: 932-1754 bp Feature: domain Description: PepP Location: 93 2-1754 bp Feature: gene Location: 2872-3543 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2881-3163 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2881-3 163 bp Feature: domain Description: GIIM Note: maturase Location: 3244-3469 bp Feature: domain Description: GIIM Note: maturase Location: 3 244-3 469 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PepP (COG0006)

Seq: SWAO01000270.1 Bradyrhizobium elkanii strain SEMIA 587 S587-224.1, whole genome shotgun sequence (2592 bp)
Overview 1 RT 1: 132-2223 bp Neighborhood of RT #1 [132, 2591] RVT-GII Feature: gene Location: 132-317 bp Feature: gene Location: 345-794 bp Feature: gene Location: 930-2591 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1530-2223 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1530-2223 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: SWAO01000283.1 Bradyrhizobium elkanii strain SEMIA 587 S587-237.1, whole genome shotgun sequence (2142 bp)
Overview 1 RT 1: 3-2024 bp Neighborhood of RT #1 [3, 2024] RVT-GII GIIM Feature: gene Location: 3-227 bp Feature: gene Location: 315-1643 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 606-1269 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 606-1269 bp Feature: domain Description: GIIM Note: maturase Location: 1341-1536 bp Feature: domain Description: GIIM Note: maturase Location: 1341-15 36 bp Feature: gene Location: 1869-2024 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: SWAO01000291.1 Bradyrhizobium elkanii strain SEMIA 587 S587-245.1, whole genome shotgun sequence (1879 bp)
Overview 1 RT 1: 186-1628 bp Neighborhood of RT #1 [186, 1798] RVT-GII GIIM Feature: gene Location: 186-380 bp Feature: gene Location: 422-1798 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 749-1367 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 749-136 7 bp Feature: domain Description: GIIM Note: maturase Location: 1418-1628 bp Feature: domain Description: GIIM Note: maturase Location: 1418-16 28 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: SWAO01000121.1 Bradyrhizobium elkanii strain SEMIA 587 S587-84.1, whole genome shotgun sequence (33539 bp)
Overview 1 RT 1: 16877-21293 bp 2 RT 2: 27036-29981 bp Neighborhood of RT #1 [16877, 21355] DDE_Tnp_IS66 RVT-GII GIIM LomR PHA02518 Neighborhood of RT #2 [27036, 29981] DDE_Tnp_1_4 RVT-GII RVT-GII Feature: gene Location: 16877-17053 bp Feature: gene Location: 17181-17906 bp Feature: domain Description: DDE_Tnp_IS66 Location: 17199-17634 bp Feature: domain Description: DDE_Tnp_IS66 Location: 17 199-17 634 bp Feature: gene Location: 18143-19471 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18434-19097 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18434-19097 bp Feature: domain Description: GIIM Note: maturase Location: 19163-19385 bp Feature: domain Description: GIIM Note: maturase Location: 19163-19385 bp Feature: gene Location: 19407-20243 bp Feature: domain Description: LomR Location: 19443-20154 bp Feature: domain Description: LomR Location: 19443-20154 bp Feature: gene Location: 20687-21355 bp Feature: domain Description: PHA02518 Location: 20696-21293 bp Feature: domain Description: PHA02518 Location: 20696-21293 bp Feature: gene Location: 27036-27440 bp Feature: gene Location: 27613-28068 bp Feature: domain Description: DDE_Tnp_1_4 Location: 27649-27823 bp Feature: domain Description: DDE_Tnp_1_4 Location: 27 649-27 823 bp Feature: gene Location: 28167-28925 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28185-28548 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28185-28548 bp Feature: gene Location: 28886-29158 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28889-29147 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28889-29147 bp Feature: gene Location: 29280-29582 bp Feature: gene Location: 29652-29981 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), LomR (COG3637), PHA02518 (ParA-like protein; Provisional), DDE_Tnp_1_4 (pfam13701)