myRT

myRT report for GCA_013395385.1_ASM1339538v1

Download annotations/find similar RTs

Seq: JAAFBB010000032.1 Escherichia coli strain BS92R-B NODE_32_length_41619_cov_101.087863, whole genome shotgun sequence (41619 bp)
Overview 1 RT 1: 2-1608 bp Neighborhood of RT #1 [2, 1682] InsE RVT-GII RVT-GII group_II_RT_mat IS285 Feature: gene Location: 2-340 bp Feature: domain Description: InsE Location: 5-296 bp Feature: domain Description: InsE Location: 5-296 bp Feature: gene Location: 379-582 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 424-580 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 424-580 bp Feature: gene Location: 616-852 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 619-799 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 9-799 bp Feature: gene Location: 845-1057 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 848-1046 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 848-1 046 bp Feature: gene Location: 1200-1682 bp Feature: domain Description: IS285 Location: 1230-1608 bp Feature: domain Description: IS285 Location: 1 230-1 608 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, group_II_RT_mat (TIGR04416), IS285 (COG3328)

Seq: JAAFBB010000035.1 Escherichia coli strain BS92R-B NODE_35_length_36674_cov_119.619942, whole genome shotgun sequence (36674 bp)
Overview 1 RT 1: 15033-19324 bp Neighborhood of RT #1 [15033, 19324] YesM RVT-GII GIIM RVT-GII Feature: gene Location: 15033-16295 bp Feature: domain Description: YesM Location: 15546-16287 bp Feature: domain Description: YesM Location: 15546-162 87 bp Feature: gene Location: 16325-16495 bp Feature: gene Location: 16845-17366 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16851-17133 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16851-17133 bp Feature: domain Description: GIIM Note: maturase Location: 17181-17361 bp Feature: domain Description: GIIM Note: maturase Location: 17181-17361 bp Feature: gene Location: 17394-17933 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17724-17802 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1772 4-17802 bp Feature: gene Location: 17964-18161 bp Feature: gene Location: 18419-19324 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388)

Seq: JAAFBB010000005.1 Escherichia coli strain BS92R-B NODE_5_length_262259_cov_122.454120, whole genome shotgun sequence (262259 bp)
Overview 1 RT 1: 259851-262256 bp Neighborhood of RT #1 [259851, 262256] SLATT_5 RVT-UG17 Feature: gene Location: 259851-259991 bp Feature: gene Location: 260004-260555 bp Feature: domain Description: SLATT_5 Location: 260010-260526 bp Feature: domain Description: SLATT_5 Location: 260010-260526 bp Feature: gene Location: 260533-261903 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 260761-261367 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 260761-2613 67 bp Feature: gene Location: 262011-262256 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), RVT-UG17

Seq: JAAFBB010000067.1 Escherichia coli strain BS92R-B NODE_67_length_5451_cov_109.985672, whole genome shotgun sequence (5451 bp)
Overview 1 RT 1: 3-4610 bp Neighborhood of RT #1 [3, 4610] PAAR_1 RVT-GII GIIM Feature: gene Location: 3-410 bp Feature: domain Description: PAAR_1 Location: 195-411 bp Feature: domain Description: PAAR_1 Location: 195-4 11 bp Feature: gene Location: 454-696 bp Feature: gene Location: 1084-2583 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1537-2194 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1537-2194 bp Feature: domain Description: GIIM Note: maturase Location: 2284-2491 bp Feature: domain Description: GIIM Note: maturase Location: 2284 -24 91 bp Feature: gene Location: 3027-3692 bp Feature: gene Location: 3705-4610 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PAAR_1 (cd14737), RVT-GII, GIIM (pfam08388)