myRT

myRT report for GCA_013395495.1_ASM1339549v1

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Seq: JAAFBE010000022.1 Escherichia coli strain BS80R-2-A NODE_22_length_93389_cov_167.666345, whole genome shotgun sequence (93389 bp)
Overview 1 RT 1: 26087-30378 bp Neighborhood of RT #1 [26087, 30378] YesM RVT-GII GIIM RVT-GII Feature: gene Location: 26087-27349 bp Feature: domain Description: YesM Location: 26600-27341 bp Feature: domain Description: YesM Location: 26600-27341 bp Feature: gene Location: 27379-27549 bp Feature: gene Location: 27899-28420 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27905-28187 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27905-281 87 bp Feature: domain Description: GIIM Note: maturase Location: 28235-28415 bp Feature: domain Description: GIIM Note: maturase Location: 28235-2841 5 bp Feature: gene Location: 28448-28987 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28778-28856 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28778-28856 bp Feature: gene Location: 29018-29215 bp Feature: gene Location: 29473-30378 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388)

Seq: JAAFBE010000024.1 Escherichia coli strain BS80R-2-A NODE_24_length_89538_cov_180.200747, whole genome shotgun sequence (89538 bp)
Overview 1 RT 1: 14630-18170 bp 2 RT 2: 49424-53306 bp Neighborhood of RT #1 [14630, 18172] COG4584 COG4584 IstB_IS21_ATP IstB_IS21 RVT-GII GIIM DDE_Tnp_IS66_C Dps Neighborhood of RT #2 [49424, 53311] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 14630-15691 bp Feature: domain Description: COG4584 Location: 14636-15029 bp Feature: domain Description: COG4584 Location: 14636-1502 9 bp Feature: domain Description: COG4584 Location: 15143-15557 bp Feature: domain Description: COG4584 Location: 15143-15557 bp Feature: gene Location: 15708-16463 bp Feature: domain Description: IstB_IS21_ATP Location: 15780-15864 bp Feature: domain Description: IstB_IS2 1_ATP Location: 15780-15864 bp Feature: domain Description: IstB_IS21 Location: 15873-16398 bp Feature: domain Description: IstB_IS2 1 Location: 15873-16398 bp Feature: gene Location: 16605-17654 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16623-17277 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1662 3-172 77 bp Feature: domain Description: GIIM Note: maturase Location: 17355-17580 bp Feature: domain Description: GIIM Note: maturase Location: 17355-17580 bp Feature: gene Location: 17770-17916 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 17782-17893 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 17782 -17893 bp Feature: gene Location: 18008-18172 bp Feature: domain Description: Dps Location: 18011-18170 bp Feature: domain Description: Dps Location: 18011-18170 bp Feature: gene Location: 49424-50140 bp Feature: domain Description: rph Location: 49427-50135 bp Feature: domain Description: rph Location: 4942 7-50135 bp Feature: gene Location: 50191-50847 bp Feature: domain Description: pyrE Location: 50209-50842 bp Feature: domain Description: pyrE Location: 502 09-50842 bp Feature: gene Location: 51145-52104 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 51280-51829 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 512 80-5182 9 bp Feature: gene Location: 52150-52746 bp Feature: domain Description: slmA Location: 52156-52732 bp Feature: domain Description: slmA Location: 52 156-52 732 bp Feature: gene Location: 52853-53311 bp Feature: domain Description: dut Location: 52859-53306 bp Feature: domain Description: dut Location: 52 859-53306 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4584 (Transposase ), IstB_IS21_ATP (pfam08483), IstB_IS21 (pfam01695), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), Dps (COG0783), rph (PRK00173), pyrE (TIGR00336), RVT-Retrons
slmA (PRK09480), dut (TIGR00576)

Seq: JAAFBE010000057.1 Escherichia coli strain BS80R-2-A NODE_57_length_10718_cov_156.528616, whole genome shotgun sequence (10718 bp)
Overview 1 RT 1: 1710-5304 bp Neighborhood of RT #1 [1710, 5304] Peptidase_S74 RVT-UG17 SLATT_5 Feature: gene Location: 1710-2750 bp Feature: domain Description: Peptidase_S74 Location: 2391-2538 bp Feature: domain Description: Peptidase_S74 Location: 23 91-253 8 bp Feature: gene Location: 2793-3080 bp Feature: gene Location: 3188-4558 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 3416-4022 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 3 416-4022 bp Feature: gene Location: 4536-5087 bp Feature: domain Description: SLATT_5 Location: 4542-5058 bp Feature: domain Description: SLATT_5 Location: 4542-5058 bp Feature: gene Location: 5125-5304 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Peptidase_S74 (pfam13884), RVT-UG17, SLATT_5 (pfam18160)

Seq: JAAFBE010000085.1 Escherichia coli strain BS80R-2-A NODE_85_length_2784_cov_491.303657, whole genome shotgun sequence (2784 bp)
Overview 1 RT 1: 64-2783 bp Neighborhood of RT #1 [64, 2782] RVT-GII GIIM PHA02517 Feature: gene Location: 64-435 bp Feature: gene Location: 729-2252 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1002-1734 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1002-1734 bp Feature: domain Description: GIIM Note: maturase Location: 1809-2007 bp Feature: domain Description: GIIM Note: maturase Location: 1809-2007 bp Feature: gene Location: 2381-2782 bp Feature: domain Description: PHA02517 Location: 2384-2783 bp Feature: domain Description: PHA02517 Location: 2384 -2783 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)