myRT

myRT report for GCA_013395555.1_ASM1339555v1

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Seq: JAAFBK010000034.1 Escherichia coli strain BS2R-1-B NODE_34_length_42879_cov_143.786716, whole genome shotgun sequence (42879 bp)
Overview 1 RT 1: 2-1608 bp Neighborhood of RT #1 [2, 1682] InsE RVT-GII RVT-GII group_II_RT_mat IS285 Feature: gene Location: 2-340 bp Feature: domain Description: InsE Location: 5-296 bp Feature: domain Description: InsE Location: 5-296 bp Feature: gene Location: 379-582 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 424-580 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 424-580 bp Feature: gene Location: 616-852 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 619-799 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 9-799 bp Feature: gene Location: 845-1057 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 848-1046 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 848-1 046 bp Feature: gene Location: 1200-1682 bp Feature: domain Description: IS285 Location: 1230-1608 bp Feature: domain Description: IS285 Location: 1 230-1 608 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, group_II_RT_mat (TIGR04416), IS285 (COG3328)

Seq: JAAFBK010000035.1 Escherichia coli strain BS2R-1-B NODE_35_length_39789_cov_168.182313, whole genome shotgun sequence (39789 bp)
Overview 1 RT 1: 3-4610 bp Neighborhood of RT #1 [3, 4610] PAAR_1 RVT-GII GIIM Feature: gene Location: 3-410 bp Feature: domain Description: PAAR_1 Location: 195-411 bp Feature: domain Description: PAAR_1 Location: 195-411 bp Feature: gene Location: 584-790 bp Feature: gene Location: 1084-2583 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1537-2194 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1537-2 194 bp Feature: domain Description: GIIM Note: maturase Location: 2284-2491 bp Feature: domain Description: GIIM Note: maturase Location: 2 2 84-2 491 bp Feature: gene Location: 3027-3692 bp Feature: gene Location: 3705-4610 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PAAR_1 (cd14737), RVT-GII, GIIM (pfam08388)

Seq: JAAFBK010000037.1 Escherichia coli strain BS2R-1-B NODE_37_length_36089_cov_163.994530, whole genome shotgun sequence (36089 bp)
Overview 1 RT 1: 14448-18739 bp Neighborhood of RT #1 [14448, 18739] YesM RVT-GII GIIM RVT-GII Feature: gene Location: 14448-15710 bp Feature: domain Description: YesM Location: 14961-15702 bp Feature: domain Description: YesM Location: 14961-15702 bp Feature: gene Location: 15740-15910 bp Feature: gene Location: 16260-16781 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16266-16548 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16266-16548 bp Feature: domain Description: GIIM Note: maturase Location: 16596-16776 bp Feature: domain Description: GIIM Note: maturase Location: 16596-16776 bp Feature: gene Location: 16809-17348 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17139-17217 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1713 9-17217 bp Feature: gene Location: 17379-17576 bp Feature: gene Location: 17834-18739 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388)

Seq: JAAFBK010000004.1 Escherichia coli strain BS2R-1-B NODE_4_length_262259_cov_173.833722, whole genome shotgun sequence (262259 bp)
Overview 1 RT 1: 259851-262256 bp Neighborhood of RT #1 [259851, 262256] SLATT_5 RVT-UG17 Feature: gene Location: 259851-259991 bp Feature: gene Location: 260004-260555 bp Feature: domain Description: SLATT_5 Location: 260010-260526 bp Feature: domain Description: SLATT_5 Location: 260010-260526 bp Feature: gene Location: 260533-261903 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 260761-261367 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 260761-261367 bp Feature: gene Location: 262011-262256 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), RVT-UG17