myRT

myRT report for GCA_013395565.1_ASM1339556v1

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Seq: JAAFBJ010000031.1 Escherichia coli strain BS2R-2-C NODE_31_length_42559_cov_174.400075, whole genome shotgun sequence (42559 bp)
Overview 1 RT 1: 2-1288 bp Neighborhood of RT #1 [2, 1362] RVT-GII RVT-GII group_II_RT_mat IS285 Feature: gene Location: 2-262 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 104-260 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 04-260 bp Feature: gene Location: 296-532 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 299-479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 299-479 bp Feature: gene Location: 525-737 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 528-726 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 528-726 bp Feature: gene Location: 880-1362 bp Feature: domain Description: IS285 Location: 910-1288 bp Feature: domain Description: IS285 Location: 91 0-1 288 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, group_II_RT_mat (TIGR04416), IS285 (COG3328)

Seq: JAAFBJ010000034.1 Escherichia coli strain BS2R-2-C NODE_34_length_36665_cov_197.528015, whole genome shotgun sequence (36665 bp)
Overview 1 RT 1: 15033-19324 bp Neighborhood of RT #1 [15033, 19324] YesM RVT-GII GIIM RVT-GII Feature: gene Location: 15033-16295 bp Feature: domain Description: YesM Location: 15546-16287 bp Feature: domain Description: YesM Location: 15546-162 87 bp Feature: gene Location: 16325-16495 bp Feature: gene Location: 16845-17366 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16851-17133 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16851-17133 bp Feature: domain Description: GIIM Note: maturase Location: 17181-17361 bp Feature: domain Description: GIIM Note: maturase Location: 17181-17361 bp Feature: gene Location: 17394-17933 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17724-17802 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1772 4-17802 bp Feature: gene Location: 17964-18161 bp Feature: gene Location: 18419-19324 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388)

Seq: JAAFBJ010000004.1 Escherichia coli strain BS2R-2-C NODE_4_length_265047_cov_205.995992, whole genome shotgun sequence (265047 bp)
Overview 1 RT 1: 2035-5510 bp Neighborhood of RT #1 [2035, 5515] DUF4094 Peptidase_S74 RVT-UG17 SLATT_5 PRK10597 Feature: gene Location: 2035-2739 bp Feature: domain Description: DUF4094 Location: 2077-2167 bp Feature: domain Description: DUF4094 Location: 2077-2167 bp Feature: domain Description: Peptidase_S74 Location: 2383-2542 bp Feature: domain Description: Peptidase_S74 Location: 23 83 -2542 bp Feature: gene Location: 2750-3037 bp Feature: gene Location: 3145-4515 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 3373-3979 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 3 3 73 -3 979 bp Feature: gene Location: 4493-5044 bp Feature: domain Description: SLATT_5 Location: 4499-5015 bp Feature: domain Description: SLATT_5 Location: 4499-5015 bp Feature: gene Location: 5267-5515 bp Feature: domain Description: PRK10597 Location: 5270-5510 bp Feature: domain Description: PRK10597 Location: 5270-5510 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4094 (pfam13334), Peptidase_S74 (pfam13884), RVT-UG17, SLATT_5 (pfam18160), PRK10597 (DNA damage-inducible protein I; Provisional)

Seq: JAAFBJ010000063.1 Escherichia coli strain BS2R-2-C NODE_63_length_5451_cov_173.196316, whole genome shotgun sequence (5451 bp)
Overview 1 RT 1: 3-4610 bp Neighborhood of RT #1 [3, 4610] PAAR_1 RVT-GII GIIM Feature: gene Location: 3-410 bp Feature: domain Description: PAAR_1 Location: 195-411 bp Feature: domain Description: PAAR_1 Location: 195-4 11 bp Feature: gene Location: 454-696 bp Feature: gene Location: 1084-2583 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1537-2194 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1537-2194 bp Feature: domain Description: GIIM Note: maturase Location: 2284-2491 bp Feature: domain Description: GIIM Note: maturase Location: 2284 -24 91 bp Feature: gene Location: 3027-3692 bp Feature: gene Location: 3705-4610 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PAAR_1 (cd14737), RVT-GII, GIIM (pfam08388)