myRT

myRT report for GCA_013395685.1_ASM1339568v1

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Seq: JAAFBQ010000026.1 Escherichia coli strain BS28R-A NODE_26_length_82085_cov_195.046191, whole genome shotgun sequence (82085 bp)
Overview 1 RT 1: 54867-59504 bp Neighborhood of RT #1 [54867, 59504] HTH_XRE RVT-Retrons PRK13889 Feature: gene Location: 54867-55082 bp Feature: gene Location: 55173-55454 bp Feature: domain Description: HTH_XRE Location: 55188-55353 bp Feature: domain Description: HTH_XRE Location: 551 88-55353 bp Feature: gene Location: 55447-56547 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 55588-56140 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 55588-561 40 bp Feature: gene Location: 56624-58126 bp Feature: domain Description: PRK13889 Location: 56627-57206 bp Feature: domain Description: PRK1 3889 Location: 56627-57206 bp Feature: gene Location: 59067-59504 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, PRK13889 (conjugal transfer relaxase TraA; Provisional)

Seq: JAAFBQ010000032.1 Escherichia coli strain BS28R-A NODE_32_length_48655_cov_209.971427, whole genome shotgun sequence (48655 bp)
Overview 1 RT 1: 20068-26099 bp Neighborhood of RT #1 [20068, 26099] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase Phage_ASH Feature: gene Location: 20068-20988 bp Feature: domain Description: AbiEii Location: 20110-20851 bp Feature: domain Description: AbiEii Location: 2 0110-2 0851 bp Feature: gene Location: 20975-21778 bp Feature: domain Description: AbiEi_3_N Location: 21008-21269 bp Feature: domain Description: AbiEi_3_N Location: 2 1008-2 12 69 bp Feature: domain Description: AbiEi_3 Location: 21281-21737 bp Feature: domain Description: AbiEi_3 Location: 2 12 81-2 1737 bp Feature: gene Location: 22073-25282 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 22601-23090 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2 2 601-2 3090 bp Feature: domain Description: nitrilase Location: 24596-25193 bp Feature: domain Description: nitrilase Location: 2 4596-2 5193 bp Feature: gene Location: 25443-25583 bp Feature: domain Description: Phage_ASH Location: 25470-25563 bp Feature: domain Description: Phage_ASH Location: 2 5470-2 5563 bp Feature: gene Location: 25629-26099 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), Phage_ASH (pfam10554)

Seq: JAAFBQ010000034.1 Escherichia coli strain BS28R-A NODE_34_length_45363_cov_317.988451, whole genome shotgun sequence (45363 bp)
Overview 1 RT 1: 18725-22279 bp Neighborhood of RT #1 [18725, 22284] PRK09413 RVT-GII RVT-GII GIIM PinE Feature: gene Location: 18725-18889 bp Feature: gene Location: 18900-19097 bp Feature: domain Description: PRK09413 Location: 18903-19065 bp Feature: domain Description: PRK09413 Location: 18903 -19065 bp Feature: gene Location: 19573-19986 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19894-19981 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19894-19981 bp Feature: gene Location: 20050-20925 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20056-20512 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20056-20512 bp Feature: domain Description: GIIM Note: maturase Location: 20560-20791 bp Feature: domain Description: GIIM Note: maturase Location: 20560-20791 bp Feature: gene Location: 21136-21537 bp Feature: gene Location: 21637-22284 bp Feature: domain Description: PinE Location: 21730-22279 bp Feature: domain Description: PinE Location: 2173 0-22279 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09413 (IS2 repressor TnpA; Reviewed), RVT-GII, GIIM (pfam08388), PinE (COG1961)

Seq: JAAFBQ010000082.1 Escherichia coli strain BS28R-A NODE_82_length_2272_cov_610.690661, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 1-1935 bp Neighborhood of RT #1 [1, 2180] RVT-GII GIIM Feature: gene Location: 1-363 bp Feature: gene Location: 657-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)