myRT

myRT report for GCA_013401755.1_ASM1340175v1

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Seq: JACBJC010000001.1 Serratia fonticola strain UPMP2116 contig00001, whole genome shotgun sequence (767470 bp)
Overview 1 RT 1: 335844-338094 bp Neighborhood of RT #1 [335844, 338096] InsE RVT-GII rve_2 LomR Feature: gene Location: 335844-336014 bp Feature: gene Location: 336079-336339 bp Feature: domain Description: InsE Location: 336097-336337 bp Feature: domain Description: InsE Location: 336097-336337 bp Feature: gene Location: 336535-336864 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 336541-336661 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 336541 -336661 bp Feature: gene Location: 336898-337119 bp Feature: domain Description: rve_2 Location: 336937-337093 bp Feature: domain Description: rve_2 Location: 336937-337093 bp Feature: gene Location: 337287-338096 bp Feature: domain Description: LomR Location: 337302-338094 bp Feature: domain Description: LomR Location: 337302-338094 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, rve_2 (pfam13333), LomR (COG3637)

Seq: JACBJC010000015.1 Serratia fonticola strain UPMP2116 contig00015, whole genome shotgun sequence (157985 bp)
Overview 1 RT 1: 52316-59018 bp 2 RT 2: 129229-134373 bp Neighborhood of RT #1 [52316, 59020] DEXDc PRK10945 RVT-UG2 PinE Neighborhood of RT #2 [129229, 134396] DUF4156 RVT_N RVT-GII GIIM HNHc groEL Feature: gene Location: 52316-55138 bp Feature: domain Description: DEXDc Location: 53498-53777 bp Feature: domain Description: DEXDc Location: 53498-53777 bp Feature: gene Location: 56365-56568 bp Feature: domain Description: PRK10945 Location: 56368-56566 bp Feature: domain Description: PRK10945 Location: 56368-56566 bp Feature: gene Location: 56615-57892 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 56816-57599 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 56816-57599 bp Feature: gene Location: 58031-58192 bp Feature: gene Location: 58457-59020 bp Feature: domain Description: PinE Location: 58469-59018 bp Feature: domain Description: PinE Location: 58469-59018 bp Feature: gene Location: 129229-129630 bp Feature: domain Description: DUF4156 Location: 129352-129625 bp Feature: domain Description: DUF4156 Location: 12 9352 -12 962 5 bp Feature: gene Location: 129586-129870 bp Feature: gene Location: 129958-131664 bp Feature: domain Description: RVT_N Location: 130021-130255 bp Feature: domain Description: RVT_N Location: 13002 1-1302 55 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 130309-130954 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 130309-130954 bp Feature: domain Description: GIIM Note: maturase Location: 131008-131239 bp Feature: domain Description: GIIM Note: maturase Location: 131008-1312 39 bp Feature: domain Description: HNHc Note: nucleases Location: 131455-131611 bp Feature: domain Description: HNHc Note: nucleases Location: 131455-131611 bp Feature: gene Location: 132325-132453 bp Feature: gene Location: 132750-134396 bp Feature: domain Description: groEL Location: 132756-134373 bp Feature: domain Description: groEL Location: 132 756-134373 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEXDc (smart00487), PRK10945 (hemolysin expression modulator Hha), RVT-UG2, PinE (COG1961), DUF4156 (pfam13698), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), groEL (PRK12852)

Seq: JACBJC010000018.1 Serratia fonticola strain UPMP2116 contig00018, whole genome shotgun sequence (102987 bp)
Overview 1 RT 1: 93257-99648 bp Neighborhood of RT #1 [93257, 99648] RVT-Retrons DUF3732 Feature: gene Location: 93257-93385 bp Feature: gene Location: 94073-94813 bp Feature: gene Location: 94976-95932 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 95216-95747 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 95216-95747 bp Feature: gene Location: 96219-98042 bp Feature: domain Description: DUF3732 Location: 97530-98016 bp Feature: domain Description: DUF3 73 2 Location: 9753 0-98016 bp Feature: gene Location: 98485-99648 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, DUF3732 (pfam12532)