myRT

myRT report for GCA_013404205.1_ASM1340420v1

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Seq: JABUFM010000035.1 Escherichia coli strain HUM-543 NODE_35_length_47687_cov_135.734489, whole genome shotgun sequence (47687 bp)
Overview 1 RT 1: 11970-15522 bp 2 RT 2: 45400-47332 bp Neighborhood of RT #1 [11970, 15527] PRK09413 RVT-GII GIIM PinE Neighborhood of RT #2 [45400, 47577] VagC PHA02517 RVT-GII GIIM Feature: gene Location: 11970-12134 bp Feature: gene Location: 12145-12342 bp Feature: domain Description: PRK09413 Location: 12148-12310 bp Feature: domain Description: PRK0941 3 Location: 1 21 48-1 231 0 bp Feature: gene Location: 12818-14170 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13139-13757 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 31 39-1 3757 bp Feature: domain Description: GIIM Note: maturase Location: 13805-14036 bp Feature: domain Description: GIIM Note: maturase Location: 1 3805-1 4036 bp Feature: gene Location: 14379-14780 bp Feature: gene Location: 14880-15527 bp Feature: domain Description: PinE Location: 14973-15522 bp Feature: domain Description: PinE Location: 1 4973-1 5522 bp Feature: gene Location: 45400-45702 bp Feature: domain Description: VagC Location: 45481-45670 bp Feature: domain Description: VagC Location: 45481 -45670 bp Feature: gene Location: 45668-46114 bp Feature: domain Description: PHA02517 Location: 45671-46112 bp Feature: domain Description: PHA0251 7 Location: 45671 -461 1 2 bp Feature: gene Location: 46231-47577 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46327-47059 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46327-47059 bp Feature: domain Description: GIIM Note: maturase Location: 47134-47332 bp Feature: domain Description: GIIM Note: maturase Location: 471 34-47332 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09413 (IS2 repressor TnpA; Reviewed), RVT-GII, GIIM (pfam08388), PinE (COG1961), VagC (COG4456), PHA02517 (putative transposase OrfB; Reviewed)