myRT

myRT report for GCA_013407205.1_ASM1340720v1

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Seq: JACAZR010000001.1 Clostridium saccharobutylicum strain DJ156 Ga0423278_01, whole genome shotgun sequence (5110159 bp)
Overview 1 RT 1: 105653-110547 bp 2 RT 2: 1809782-1812982 bp 3 RT 3: 2444254-2452934 bp 4 RT 4: 2567292-2574701 bp Neighborhood of RT #1 [105653, 110549] DDE_Tnp_1 PHA02517 RVT_N RVT-GII GIIM rve_2 plantaricin plantaricin Neighborhood of RT #2 [1809782, 1812982] DDE_Tnp_1 RVT-GII RVT-GII Neighborhood of RT #3 [2444254, 2452972] RVT-Retrons DUF1835 DUF3658 Sig70_famx3 Neighborhood of RT #4 [2567292, 2575201] Enpp RVT-Retrons UvrD UvrD Feature: gene Location: 105653-106921 bp Feature: domain Description: DDE_Tnp_1 Location: 106004-106619 bp Feature: domain Description: DDE_Tnp_1 Location: 1 06004-1 0661 9 bp Feature: gene Location: 106980-107837 bp Feature: domain Description: PHA02517 Location: 107268-107817 bp Feature: domain Description: PHA0251 7 Location: 1 07268-1 0781 7 bp Feature: gene Location: 108363-109898 bp Feature: RT Description: RVT_N Location: 108435-108678 bp Feature: RT Description: RVT_N Location: 1 08435-1 08678 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 108723-109383 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 08723-1 09383 bp Feature: domain Description: GIIM Note: maturase Location: 109434-109671 bp Feature: domain Description: GIIM Note: maturase Location: 1 09434-1 09671 bp Feature: domain Description: rve_2 Location: 109815-109890 bp Feature: domain Description: rve_2 Location: 1 0981 5-1 09890 bp Feature: gene Location: 109972-110238 bp Feature: domain Description: plantaricin Location: 109993-110236 bp Feature: domain Description: plantaricin Location: 1 09993-1 1 0236 bp Feature: gene Location: 110283-110549 bp Feature: domain Description: plantaricin Location: 110304-110547 bp Feature: domain Description: plantaricin Location: 1 1 0304-1 1 0547 bp Feature: gene Location: 1809782-1809988 bp Feature: domain Description: DDE_Tnp_1 Location: 1809812-1809950 bp Feature: domain Description: DDE_Tnp_1 Location: 1 80981 2-1 809950 bp Feature: gene Location: 1810080-1810430 bp Feature: gene Location: 1810901-1811539 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1811237-1811420 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 81 1 237-1 81 1 420 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1811423-1811528 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 81 1 423-1 81 1 528 bp Feature: gene Location: 1811967-1812380 bp Feature: gene Location: 1812848-1812982 bp Feature: gene Location: 2444254-2447301 bp Feature: gene Location: 2447303-2449111 bp Feature: gene Location: 2449108-2450613 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2449744-2450386 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2449744-2450386 bp Feature: gene Location: 2451201-2452226 bp Feature: domain Description: DUF1835 Location: 2451216-2451585 bp Feature: domain Description: DUF1 835 Location: 2451 21 6-2451 585 bp Feature: domain Description: DUF3658 Location: 2451675-2451987 bp Feature: domain Description: DUF3658 Location: 2451 675-2451 987 bp Feature: gene Location: 2452445-2452972 bp Feature: domain Description: Sig70_famx3 Location: 2452451-2452934 bp Feature: domain Description: Sig70_famx3 Location: 2452451 -2452934 bp Feature: gene Location: 2567292-2567828 bp Feature: gene Location: 2568399-2569703 bp Feature: domain Description: Enpp Location: 2568417-2569653 bp Feature: domain Description: Enpp Location: 256841 7-2569653 bp Feature: gene Location: 2570005-2571129 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2570221-2570779 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2570221 -2570779 bp Feature: gene Location: 2571341-2572348 bp Feature: gene Location: 2572634-2575201 bp Feature: domain Description: UvrD Location: 2573156-2574284 bp Feature: domain Description: UvrD Location: 25731 56-2574284 bp Feature: domain Description: UvrD Location: 2574461-2574701 bp Feature: domain Description: UvrD Location: 2574461 -2574701 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), PHA02517 (putative transposase OrfB; Reviewed), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), rve_2 (pfam13333), plantaricin (NF000539), RVT-Retrons, DUF1835 (pfam08874), DUF3658 (pfam12395)
Sig70_famx3 (TIGR02954), Enpp (cd16018), UvrD (COG0210)