myRT

myRT report for GCA_013407365.1_ASM1340736v1

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Seq: JACAZO010000001.1 Clostridium beijerinckii strain DJ079 Ga0423245_01, whole genome shotgun sequence (3421730 bp)
Overview 1 RT 1: 1258344-1265649 bp 2 RT 2: 1508892-1513781 bp 3 RT 3: 1516652-1525877 bp 4 RT 4: 1867079-1872665 bp 5 RT 5: 2372960-2378358 bp 6 RT 6: 2422458-2435483 bp 7 RT 7: 2680868-2690477 bp 8 RT 8: 3070841-3074931 bp 9 RT 9: 3106110-3110725 bp Neighborhood of RT #1 [1258344, 1265657] BaeS PhoE RVT-GII PBP1_GGBP Neighborhood of RT #2 [1508892, 1513795] DUF2922 RVT-GII HNHc PRK06811 Neighborhood of RT #3 [1516652, 1525897] PTPLP-like GxGYxYP_N GxGYxYP_C sCache_3_2 Tar RVT-GII OmpR CcmA Neighborhood of RT #4 [1867079, 1872676] spoT_relA Acetyltransf_7 RVT-GII DUF3850 FieF Neighborhood of RT #5 [2372960, 2378387] PRK06696 COG4997 RVT-GII GIIM TetR_N TetR_C_33 MFS_MdtG_MDR_like Neighborhood of RT #6 [2422458, 2435483] RMtype1_S_LdeBORF1052P-TRD2-CR2 RMtype1_S_LdeBORF1052P-TRD2-CR2 COG0610 RVT-UG5 Neighborhood of RT #7 [2680868, 2690485] Beta4Glucosyltransferase TPR_1 TPR Collagen Collagen Collagen Collagen Collagen KOG3544 KOG3546 Collagen RVT-GII GT2 Methyltransf_23 RfaB Neighborhood of RT #8 [3070841, 3074939] RVT-GII HNHc DUF2922 Bro-N ANT Neighborhood of RT #9 [3106110, 3110799] RVT-GII HNHc DUF2922 MATE_MepA_like Feature: gene Location: 1258344-1259609 bp Feature: domain Description: BaeS Location: 1259169-1259601 bp Feature: domain Description: BaeS Location: 1 2591 69-1 259601 bp Feature: gene Location: 1260040-1260834 bp Feature: domain Description: PhoE Location: 1260145-1260811 bp Feature: domain Description: PhoE Location: 1 2601 45-1 26081 1 bp Feature: gene Location: 1261476-1262390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1261731-1262355 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 261 731 -1 262355 bp Feature: gene Location: 1263757-1264332 bp Feature: gene Location: 1264605-1265657 bp Feature: domain Description: PBP1_GGBP Location: 1264719-1265649 bp Feature: domain Description: PBP1 _GGBP Location: 1 26471 9-1 265649 bp Feature: gene Location: 1508892-1509218 bp Feature: gene Location: 1509555-1509773 bp Feature: domain Description: DUF2922 Location: 1509570-1509762 bp Feature: domain Description: DUF2922 Location: 1 509570-1 509762 bp Feature: gene Location: 1510123-1511937 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1510441-1511140 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 51 0441 -1 51 1 1 40 bp Feature: domain Description: HNHc Note: nucleases Location: 1511692-1511827 bp Feature: domain Description: HNHc Note: nucleases Location: 1 51 1 692-1 51 1 827 bp Feature: gene Location: 1512224-1512352 bp Feature: gene Location: 1513250-1513795 bp Feature: domain Description: PRK06811 Location: 1513253-1513781 bp Feature: domain Description: PRK0681 1 Location: 1 51 3253-1 51 3781 bp Feature: gene Location: 1516652-1519117 bp Feature: domain Description: PTPLP-like Location: 1516778-1517552 bp Feature: domain Description: PTPLP-like Location: 1 51 6778-1 51 7552 bp Feature: domain Description: GxGYxYP_N Location: 1517702-1518332 bp Feature: domain Description: GxGYxYP_N Location: 1 51 7702-1 51 8332 bp Feature: domain Description: GxGYxYP_C Location: 1518389-1519097 bp Feature: domain Description: GxGYxYP_C Location: 1 51 8389-1 51 9097 bp Feature: gene Location: 1519415-1521412 bp Feature: domain Description: sCache_3_2 Location: 1519586-1519952 bp Feature: domain Description: sCache_3_2 Location: 1 51 9586-1 51 9952 bp Feature: domain Description: Tar Location: 1520174-1521410 bp Feature: domain Description: Tar Location: 1 5201 74-1 521 41 0 bp Feature: gene Location: 1522006-1522920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1522261-1522885 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 522261 -1 522885 bp Feature: gene Location: 1524135-1524830 bp Feature: domain Description: OmpR Location: 1524162-1524825 bp Feature: domain Description: OmpR Location: 1 5241 62-1 524825 bp Feature: gene Location: 1524977-1525897 bp Feature: domain Description: CcmA Location: 1524980-1525877 bp Feature: domain Description: CcmA Location: 1 524980-1 525877 bp Feature: gene Location: 1867079-1867510 bp Feature: domain Description: spoT_relA Location: 1867094-1867406 bp Feature: domain Description: spoT_relA Location: 1 867094-1 867406 bp Feature: gene Location: 1867710-1868180 bp Feature: domain Description: Acetyltransf_7 Location: 1867860-1868109 bp Feature: domain Description: Acetyltransf_7 Location: 1 867860-1 8681 09 bp Feature: gene Location: 1868852-1869766 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1869107-1869731 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 8691 07-1 869731 bp Feature: gene Location: 1870624-1871121 bp Feature: domain Description: DUF3850 Location: 1870630-1870855 bp Feature: domain Description: DUF3850 Location: 1 870630-1 870855 bp Feature: gene Location: 1871786-1872676 bp Feature: domain Description: FieF Location: 1871789-1872665 bp Feature: domain Description: FieF Location: 1 871 789-1 872665 bp Feature: gene Location: 2372960-2373568 bp Feature: domain Description: PRK06696 Location: 2373011-2373560 bp Feature: domain Description: PRK06696 Location: 237301 1 -2373560 bp Feature: gene Location: 2373653-2373961 bp Feature: domain Description: COG4997 Location: 2373656-2373932 bp Feature: domain Description: COG4997 Location: 2373656-2373932 bp Feature: gene Location: 2374544-2375959 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2374901-2375519 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2374901 -237551 9 bp Feature: domain Description: GIIM Note: maturase Location: 2375570-2375798 bp Feature: domain Description: GIIM Note: maturase Location: 2375570-2375798 bp Feature: gene Location: 2376211-2376768 bp Feature: domain Description: TetR_N Location: 2376265-2376376 bp Feature: domain Description: TetR_N Location: 2376265-2376376 bp Feature: domain Description: TetR_C_33 Location: 2376460-2376748 bp Feature: domain Description: TetR_C_33 Location: 2376460-2376748 bp Feature: gene Location: 2377188-2378387 bp Feature: domain Description: MFS_MdtG_MDR_like Location: 2377227-2378358 bp Feature: domain Description: MFS_MdtG_MDR_like Location: 2377227-2378358 bp Feature: gene Location: 2422458-2423660 bp Feature: domain Description: RMtype1_S_LdeBORF1052P-TRD2-CR2 Location: 2422590-2423043 bp Feature: domain Description: RMtype1 _S_LdeBORF1 052P-TRD2-CR2 Location: 2422590-2423043 bp Feature: domain Description: RMtype1_S_LdeBORF1052P-TRD2-CR2 Location: 2423100-2423655 bp Feature: domain Description: RMtype1 _S_LdeBORF1 052P-TRD2-CR2 Location: 24231 00-2423655 bp Feature: gene Location: 2423752-2426838 bp Feature: domain Description: COG0610 Location: 2423779-2426194 bp Feature: domain Description: COG061 0 Location: 2423779-24261 94 bp Feature: gene Location: 2428165-2431899 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2428624-2429071 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2428624-2429071 bp Feature: gene Location: 2431918-2432850 bp Feature: gene Location: 2433000-2435483 bp Feature: gene Location: 2680868-2681920 bp Feature: domain Description: Beta4Glucosyltransferase Location: 2680871-2681516 bp Feature: domain Description: Beta4Glucosyltransferase Location: 2680871 -2681 51 6 bp Feature: domain Description: TPR_1 Location: 2681633-2681723 bp Feature: domain Description: TPR_1 Location: 2681 633-2681 723 bp Feature: domain Description: TPR Location: 2681780-2681891 bp Feature: domain Description: TPR Location: 2681 780-2681 891 bp Feature: gene Location: 2682186-2685233 bp Feature: domain Description: Collagen Location: 2682726-2682843 bp Feature: domain Description: Collagen Location: 2682726-2682843 bp Feature: domain Description: Collagen Location: 2682858-2683029 bp Feature: domain Description: Collagen Location: 2682858-2683029 bp Feature: domain Description: Collagen Location: 2683185-2683326 bp Feature: domain Description: Collagen Location: 26831 85-2683326 bp Feature: domain Description: Collagen Location: 2683341-2683437 bp Feature: domain Description: Collagen Location: 2683341 -2683437 bp Feature: domain Description: Collagen Location: 2683524-2683635 bp Feature: domain Description: Collagen Location: 2683524-2683635 bp Feature: domain Description: KOG3544 Location: 2683728-2684139 bp Feature: domain Description: KOG3544 Location: 2683728-26841 39 bp Feature: domain Description: KOG3546 Location: 2684382-2684631 bp Feature: domain Description: KOG3546 Location: 2684382-2684631 bp Feature: domain Description: Collagen Location: 2684667-2684841 bp Feature: domain Description: Collagen Location: 2684667-2684841 bp Feature: gene Location: 2686393-2687307 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2686648-2687272 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2686648-2687272 bp Feature: gene Location: 2687864-2689276 bp Feature: domain Description: GT2 Location: 2687876-2688542 bp Feature: domain Description: GT2 Location: 2687876-2688542 bp Feature: domain Description: Methyltransf_23 Location: 2688629-2689112 bp Feature: domain Description: Methyltransf_23 Location: 2688629-26891 1 2 bp Feature: gene Location: 2689427-2690485 bp Feature: domain Description: RfaB Location: 2689745-2690477 bp Feature: domain Description: RfaB Location: 2689745-2690477 bp Feature: gene Location: 3070841-3071023 bp Feature: gene Location: 3071302-3071430 bp Feature: gene Location: 3071717-3073531 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3072035-3072734 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3072035-3072734 bp Feature: domain Description: HNHc Note: nucleases Location: 3073286-3073421 bp Feature: domain Description: HNHc Note: nucleases Location: 3073286-3073421 bp Feature: gene Location: 3073887-3074105 bp Feature: domain Description: DUF2922 Location: 3073902-3074094 bp Feature: domain Description: DUF2922 Location: 3073902-3074094 bp Feature: gene Location: 3074184-3074939 bp Feature: domain Description: Bro-N Location: 3074226-3074508 bp Feature: domain Description: Bro-N Location: 3074226-3074508 bp Feature: domain Description: ANT Location: 3074622-3074931 bp Feature: domain Description: ANT Location: 3074622-3074931 bp Feature: gene Location: 3106110-3106292 bp Feature: gene Location: 3106571-3106699 bp Feature: gene Location: 3106986-3108800 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3107304-3108003 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 07304-31 08003 bp Feature: domain Description: HNHc Note: nucleases Location: 3108555-3108690 bp Feature: domain Description: HNHc Note: nucleases Location: 31 08555-31 08690 bp Feature: gene Location: 3109076-3109294 bp Feature: domain Description: DUF2922 Location: 3109091-3109283 bp Feature: domain Description: DUF2922 Location: 31 09091 -31 09283 bp Feature: gene Location: 3109411-3110799 bp Feature: domain Description: MATE_MepA_like Location: 3109444-3110725 bp Feature: domain Description: MATE_MepA_like Location: 31 09444-31 1 0725 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BaeS (COG0642), PhoE (COG0406), RVT-GII, PBP1_GGBP (cd01539), DUF2922 (pfam11148), HNHc (smart00507), PRK06811 (RNA polymerase factor sigma-70; Validated), PTPLP-like (cd14495), GxGYxYP_N (pfam16216), GxGYxYP_C (pfam14323)
sCache_3_2 (pfam17203), Tar (COG0840), OmpR (COG0745), CcmA (COG4133), spoT_relA (TIGR00691), Acetyltransf_7 (pfam13508), DUF3850 (pfam12961), FieF (COG0053), PRK06696 (uridine kinase; Validated), COG4997 (Predicted house-cleaning noncanonical NTP pyrophosphatase, all-alpha NTP-PPase (MazG) superfamily )
GIIM (pfam08388), TetR_N (pfam00440), TetR_C_33, MFS_MdtG_MDR_like (cd17391), RMtype1_S_LdeBORF1052P-TRD2-CR2 (cd17278), COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), RVT-UG5, Beta4Glucosyltransferase (cd02511), TPR_1 (pfam00515), TPR (smart00028)
Collagen (pfam01391), KOG3544 (KOG3544, Collagens (type IV and type XIII), and related proteins ), KOG3546 (KOG3546, Collagens (type XV) ), GT2 (COG1216), Methyltransf_23 (pfam13489), RfaB (COG0438), Bro-N (smart01040), ANT (pfam03374), MATE_MepA_like (cd13143)

Seq: JACAZO010000002.1 Clostridium beijerinckii strain DJ079 Ga0423245_02, whole genome shotgun sequence (1313605 bp)
Overview 1 RT 1: 863320-867710 bp Neighborhood of RT #1 [863320, 867889] COG4185 RVT-UG2 IscU Feature: gene Location: 863320-863493 bp Feature: gene Location: 863493-864059 bp Feature: domain Description: COG4185 Location: 863496-864051 bp Feature: domain Description: COG4185 Location: 863496-864051 bp Feature: gene Location: 864550-865863 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 864742-865564 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 864742 -865564 bp Feature: gene Location: 866622-866873 bp Feature: gene Location: 867197-867889 bp Feature: domain Description: IscU Location: 867290-867710 bp Feature: domain Description: IscU Location: 8672 90-867710 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4185 (Predicted ABC-type ATPase ), RVT-UG2, IscU (COG0822)

Seq: JACAZO010000003.1 Clostridium beijerinckii strain DJ079 Ga0423245_03, whole genome shotgun sequence (1029922 bp)
Overview 1 RT 1: 565375-572888 bp Neighborhood of RT #1 [565375, 572896] UvrA UvrA HTH_MARR RVT-GII GIIM OmpR BaeS Feature: gene Location: 565375-567624 bp Feature: domain Description: UvrA Location: 565381-565741 bp Feature: domain Description: UvrA Location: 5653 81-565741 bp Feature: domain Description: UvrA Location: 565756-567619 bp Feature: domain Description: UvrA Location: 565756-567619 bp Feature: gene Location: 567626-568063 bp Feature: domain Description: HTH_MARR Location: 567713-568004 bp Feature: domain Description: HTH_MARR Location: 567713 -568004 bp Feature: gene Location: 568930-570345 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 569287-569905 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 569287-569905 bp Feature: domain Description: GIIM Note: maturase Location: 569956-570184 bp Feature: domain Description: GIIM Note: maturase Location: 569956-570184 bp Feature: gene Location: 571147-571839 bp Feature: domain Description: OmpR Location: 571156-571831 bp Feature: domain Description: OmpR Location: 571156-57183 1 bp Feature: gene Location: 571844-572896 bp Feature: domain Description: BaeS Location: 571982-572888 bp Feature: domain Description: BaeS Location: 571982-572888 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UvrA (COG0178), HTH_MARR (smart00347), RVT-GII, GIIM (pfam08388), OmpR (COG0745), BaeS (COG0642)