myRT

myRT report for GCA_013408865.1_ASM1340886v1

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Seq: JACCAZ010000001.1 Modestobacter sp. DSM 46791 Ga0111585_01, whole genome shotgun sequence (4720624 bp)
Overview 1 RT 1: 557674-563200 bp 2 RT 2: 1829384-1834542 bp 3 RT 3: 2308193-2312350 bp 4 RT 4: 2454750-2467525 bp 5 RT 5: 2898071-2904119 bp 6 RT 6: 3169698-3176881 bp 7 RT 7: 3476398-3483353 bp Neighborhood of RT #1 [557674, 563202] CitB DUF222 RVT-GII GIIM Cupin_2 PRK09601 Neighborhood of RT #2 [1829384, 1834565] SpoU RVT-GII GIIM DUF222 RibD_C Neighborhood of RT #3 [2308193, 2312358] RVT-GII GIIM DUF222 DUF4177 Neighborhood of RT #4 [2454750, 2467638] TANGO2 DUF222 RVT-GII GIIM PrmC_rel_meth CT_A_B DUF222 RVT-GII GIIM PotE Neighborhood of RT #5 [2898071, 2904133] ACAD_fadE6_17_26 DUF1810 RVT-GII GIIM DUF222 AlaX Neighborhood of RT #6 [3169698, 3176898] ligA RVT-GII GIIM DUF222 CIMS_like Neighborhood of RT #7 [3476398, 3483406] upp AAA_21 RVT-GII GIIM DUF222 KOG3981 Feature: gene Location: 557674-558315 bp Feature: domain Description: CitB Location: 557683-558289 bp Feature: domain Description: CitB Location: 557683-558289 bp Feature: gene Location: 558416-559564 bp Feature: domain Description: DUF222 Location: 558536-559427 bp Feature: domain Description: DUF222 Location: 558536-559427 bp Feature: gene Location: 560153-561439 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 560369-561035 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 560369-561 035 bp Feature: domain Description: GIIM Note: maturase Location: 561113-561326 bp Feature: domain Description: GIIM Note: maturase Location: 561 1 1 3-561 326 bp Feature: gene Location: 561637-561996 bp Feature: domain Description: Cupin_2 Location: 561745-561919 bp Feature: domain Description: Cupin_2 Location: 561 745-561 91 9 bp Feature: gene Location: 562129-563202 bp Feature: domain Description: PRK09601 Location: 562132-563200 bp Feature: domain Description: PRK09601 Location: 5621 32-563200 bp Feature: gene Location: 1829384-1830154 bp Feature: domain Description: SpoU Location: 1829399-1830143 bp Feature: domain Description: SpoU Location: 1 829399-1 8301 43 bp Feature: gene Location: 1830222-1830518 bp Feature: gene Location: 1830860-1832146 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1831076-1831742 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 831 076-1 831 742 bp Feature: domain Description: GIIM Note: maturase Location: 1831820-1832033 bp Feature: domain Description: GIIM Note: maturase Location: 1 831 820-1 832033 bp Feature: gene Location: 1832735-1833838 bp Feature: domain Description: DUF222 Location: 1832816-1833704 bp Feature: domain Description: DUF222 Location: 1 83281 6-1 833704 bp Feature: gene Location: 1834005-1834565 bp Feature: domain Description: RibD_C Location: 1834017-1834542 bp Feature: domain Description: RibD_C Location: 1 83401 7-1 834542 bp Feature: gene Location: 2308193-2308708 bp Feature: gene Location: 2308824-2308964 bp Feature: gene Location: 2309003-2310289 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2309219-2309885 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 230921 9-2309885 bp Feature: domain Description: GIIM Note: maturase Location: 2309963-2310176 bp Feature: domain Description: GIIM Note: maturase Location: 2309963-231 01 76 bp Feature: gene Location: 2310878-2311987 bp Feature: domain Description: DUF222 Location: 2310959-2311850 bp Feature: domain Description: DUF222 Location: 231 0959-231 1 850 bp Feature: gene Location: 2312149-2312358 bp Feature: domain Description: DUF4177 Location: 2312164-2312350 bp Feature: domain Description: DUF41 77 Location: 231 21 64-231 2350 bp Feature: gene Location: 2454750-2455451 bp Feature: domain Description: TANGO2 Location: 2454813-2455035 bp Feature: domain Description: TANGO2 Location: 245481 3-2455035 bp Feature: gene Location: 2455653-2456768 bp Feature: domain Description: DUF222 Location: 2455746-2456634 bp Feature: domain Description: DUF222 Location: 2455746-2456634 bp Feature: gene Location: 2457357-2458643 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2457573-2458239 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2457573-2458239 bp Feature: domain Description: GIIM Note: maturase Location: 2458317-2458530 bp Feature: domain Description: GIIM Note: maturase Location: 245831 7-2458530 bp Feature: gene Location: 2458682-2458822 bp Feature: gene Location: 2458868-2459677 bp Feature: domain Description: PrmC_rel_meth Location: 2458916-2459657 bp Feature: domain Description: PrmC_rel_meth Location: 245891 6-2459657 bp Feature: gene Location: 2461429-2462280 bp Feature: domain Description: CT_A_B Location: 2461510-2462269 bp Feature: domain Description: CT_A_B Location: 2461 51 0-2462269 bp Feature: gene Location: 2462442-2463551 bp Feature: domain Description: DUF222 Location: 2462526-2463414 bp Feature: domain Description: DUF222 Location: 2462526-246341 4 bp Feature: gene Location: 2464140-2465426 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2464356-2465022 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2464356-2465022 bp Feature: domain Description: GIIM Note: maturase Location: 2465100-2465313 bp Feature: domain Description: GIIM Note: maturase Location: 24651 00-246531 3 bp Feature: gene Location: 2465723-2466040 bp Feature: gene Location: 2466154-2467638 bp Feature: domain Description: PotE Location: 2466226-2467525 bp Feature: domain Description: PotE Location: 2466226-2467525 bp Feature: gene Location: 2898071-2899234 bp Feature: domain Description: ACAD_fadE6_17_26 Location: 2898119-2899223 bp Feature: domain Description: ACAD_fadE6_1 7_26 Location: 28981 1 9-2899223 bp Feature: gene Location: 2899329-2899763 bp Feature: domain Description: DUF1810 Location: 2899353-2899761 bp Feature: domain Description: DUF1 81 0 Location: 2899353-2899761 bp Feature: gene Location: 2900039-2901325 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2900255-2900921 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2900255-2900921 bp Feature: domain Description: GIIM Note: maturase Location: 2900999-2901212 bp Feature: domain Description: GIIM Note: maturase Location: 2900999-2901 21 2 bp Feature: gene Location: 2901914-2903023 bp Feature: domain Description: DUF222 Location: 2901995-2902886 bp Feature: domain Description: DUF222 Location: 2901 995-2902886 bp Feature: gene Location: 2903195-2904133 bp Feature: domain Description: AlaX Location: 2903426-2904119 bp Feature: domain Description: AlaX Location: 2903426-29041 1 9 bp Feature: gene Location: 3169698-3171869 bp Feature: domain Description: ligA Location: 3169803-3171822 bp Feature: domain Description: ligA Location: 31 69803-31 71 822 bp Feature: gene Location: 3172047-3172184 bp Feature: gene Location: 3172433-3173719 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3172649-3173315 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 72649-31 7331 5 bp Feature: domain Description: GIIM Note: maturase Location: 3173393-3173606 bp Feature: domain Description: GIIM Note: maturase Location: 31 73393-31 73606 bp Feature: gene Location: 3174308-3175417 bp Feature: domain Description: DUF222 Location: 3174389-3175280 bp Feature: domain Description: DUF222 Location: 31 74389-31 75280 bp Feature: gene Location: 3175858-3176898 bp Feature: domain Description: CIMS_like Location: 3175942-3176881 bp Feature: domain Description: CIMS_like Location: 31 75942-31 76881 bp Feature: gene Location: 3476398-3477030 bp Feature: domain Description: upp Location: 3476413-3477025 bp Feature: domain Description: upp Location: 347641 3-3477025 bp Feature: gene Location: 3477814-3478905 bp Feature: domain Description: AAA_21 Location: 3477886-3478135 bp Feature: domain Description: AAA_21 Location: 3477886-34781 35 bp Feature: gene Location: 3479145-3480431 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3479361-3480027 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3479361 -3480027 bp Feature: domain Description: GIIM Note: maturase Location: 3480105-3480318 bp Feature: domain Description: GIIM Note: maturase Location: 34801 05-348031 8 bp Feature: gene Location: 3481020-3482129 bp Feature: domain Description: DUF222 Location: 3481101-3481992 bp Feature: domain Description: DUF222 Location: 3481 1 01 -3481 992 bp Feature: gene Location: 3482366-3483406 bp Feature: domain Description: KOG3981 Location: 3482591-3483353 bp Feature: domain Description: KOG3981 Location: 3482591 -3483353 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CitB (TIGR02484), DUF222 (pfam02720), RVT-GII, GIIM (pfam08388), Cupin_2 (pfam07883), PRK09601 (redox-regulated ATPase YchF), SpoU (COG0566), RibD_C (pfam01872), DUF4177 (pfam13783), TANGO2 (pfam05742)
PrmC_rel_meth (TIGR03704), CT_A_B (pfam02626), PotE (COG0531), ACAD_fadE6_17_26 (cd01152), DUF1810 (pfam08837), AlaX (COG2872), ligA (PRK14351), CIMS_like (cd03310), upp (TIGR01091), AAA_21 (pfam13304)
KOG3981 (KOG3981, Deoxyribose-phosphate aldolase )