myRT

myRT report for GCA_013408935.1_ASM1340893v1

Download annotations/find similar RTs

Seq: JACCAU010000001.1 Paraburkholderia bryophila strain H2C3B Ga0394402_01, whole genome shotgun sequence (8091710 bp)
Overview 1 RT 1: 3-7549 bp 2 RT 2: 1437384-1441003 bp 3 RT 3: 5002554-5008471 bp 4 RT 4: 5046125-5053819 bp 5 RT 5: 5456105-5460776 bp 6 RT 6: 6407528-6413603 bp Neighborhood of RT #1 [3, 7614] PRK09685 2A0306 RVT-GII GIIM PRK06635 tilS tilS Neighborhood of RT #2 [1437384, 1441003] PRK07533 P-type_ATPase_H RVT-GII Neighborhood of RT #3 [5002554, 5008476] PilM MrcA RVT-GII GIIM cyaY Neighborhood of RT #4 [5046125, 5053893] YvaK MASE1 PAS_3 RVT-GII PRK00566 Neighborhood of RT #5 [5456105, 5460787] RVT-Retrons GlxA GyrI-like 2A0305 Neighborhood of RT #6 [6407528, 6413603] FemAB_like RVT-Retrons DUF3732 Feature: gene Location: 3-455 bp Feature: domain Description: PRK09685 Location: 39-414 bp Feature: domain Description: PRK09685 Location: 39-41 4 bp Feature: gene Location: 681-2141 bp Feature: domain Description: 2A0306 Location: 762-2100 bp Feature: domain Description: 2A0306 Location: 762-21 00 bp Feature: gene Location: 2338-3705 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2671-3286 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2671 -3286 bp Feature: domain Description: GIIM Note: maturase Location: 3349-3553 bp Feature: domain Description: GIIM Note: maturase Location: 3349-3553 bp Feature: gene Location: 4431-5681 bp Feature: domain Description: PRK06635 Location: 4434-5673 bp Feature: domain Description: PRK06635 Location: 4434-5673 bp Feature: gene Location: 6058-7614 bp Feature: domain Description: tilS Location: 6154-7231 bp Feature: domain Description: tilS Location: 61 54-7231 bp Feature: domain Description: tilS Location: 7420-7549 bp Feature: domain Description: tilS Location: 7420-7549 bp Feature: gene Location: 1437384-1438157 bp Feature: domain Description: PRK07533 Location: 1437396-1438155 bp Feature: domain Description: PRK07533 Location: 1 437396-1 4381 55 bp Feature: gene Location: 1438306-1438770 bp Feature: domain Description: P-type_ATPase_H Location: 1438321-1438741 bp Feature: domain Description: P-type_ATPase_H Location: 1 438321 -1 438741 bp Feature: gene Location: 1438727-1439329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1438931-1439210 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 438931 -1 43921 0 bp Feature: gene Location: 1440214-1440363 bp Feature: gene Location: 1440515-1441003 bp Feature: gene Location: 5002554-5003546 bp Feature: domain Description: PilM Location: 5002605-5003187 bp Feature: domain Description: PilM Location: 5002605-50031 87 bp Feature: gene Location: 5003801-5006197 bp Feature: domain Description: MrcA Location: 5003867-5006033 bp Feature: domain Description: MrcA Location: 5003867-5006033 bp Feature: gene Location: 5006325-5007692 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5006658-5007273 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5006658-5007273 bp Feature: domain Description: GIIM Note: maturase Location: 5007336-5007540 bp Feature: domain Description: GIIM Note: maturase Location: 5007336-5007540 bp Feature: gene Location: 5007944-5008150 bp Feature: gene Location: 5008159-5008476 bp Feature: domain Description: cyaY Location: 5008162-5008471 bp Feature: domain Description: cyaY Location: 50081 62-5008471 bp Feature: gene Location: 5046125-5047018 bp Feature: domain Description: YvaK Location: 5046143-5046875 bp Feature: domain Description: YvaK Location: 50461 43-5046875 bp Feature: gene Location: 5047022-5048320 bp Feature: domain Description: MASE1 Location: 5047070-5047907 bp Feature: domain Description: MASE1 Location: 5047070-5047907 bp Feature: domain Description: PAS_3 Location: 5048024-5048291 bp Feature: domain Description: PAS_3 Location: 5048024-5048291 bp Feature: gene Location: 5048459-5048935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5048537-5048873 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5048537-5048873 bp Feature: gene Location: 5048955-5049203 bp Feature: gene Location: 5049655-5053893 bp Feature: domain Description: PRK00566 Location: 5049694-5053819 bp Feature: domain Description: PRK00566 Location: 5049694-505381 9 bp Feature: gene Location: 5456105-5456443 bp Feature: gene Location: 5457148-5457327 bp Feature: gene Location: 5457374-5458288 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5457839-5458148 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5457839-54581 48 bp Feature: gene Location: 5458873-5459739 bp Feature: domain Description: GlxA Location: 5458900-5459218 bp Feature: domain Description: GlxA Location: 5458900-545921 8 bp Feature: domain Description: GyrI-like Location: 5459272-5459734 bp Feature: domain Description: GyrI-like Location: 5459272-5459734 bp Feature: gene Location: 5459996-5460787 bp Feature: domain Description: 2A0305 Location: 5460041-5460776 bp Feature: domain Description: 2A0305 Location: 5460041 -5460776 bp Feature: gene Location: 6407528-6408430 bp Feature: domain Description: FemAB_like Location: 6407531-6408425 bp Feature: domain Description: FemAB_like Location: 6407531 -6408425 bp Feature: gene Location: 6408702-6408977 bp Feature: gene Location: 6409180-6410985 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6409363-6409972 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6409363-6409972 bp Feature: gene Location: 6411139-6413115 bp Feature: domain Description: DUF3732 Location: 6412537-6413077 bp Feature: domain Description: DUF3732 Location: 641 2537-641 3077 bp Feature: gene Location: 6413118-6413603 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK09685 (DNA-binding transcriptional activator FeaR; Provisional), tilS (PRK10660), PRK07533 (enoyl- reductase FabI), P-type_ATPase_H (cd02076), PilM (pfam07419), MrcA (COG5009), cyaY (PRK01379), YvaK (COG1647)
MASE1 (pfam05231), PAS_3 (pfam08447), PRK00566 (DNA-directed RNA polymerase subunit beta'; Provisional), RVT-Retrons, GlxA (COG4977), GyrI-like (pfam06445), 2A0305 (TIGR00908), FemAB_like (pfam04339), DUF3732 (pfam12532)

Seq: JACCAU010000002.1 Paraburkholderia bryophila strain H2C3B Ga0394402_02, whole genome shotgun sequence (219359 bp)
Overview 1 RT 1: 159127-168660 bp Neighborhood of RT #1 [159127, 168695] PRK12846 ligA RVT-GII GIIM septum_zipA ZipA_C SMC_prok_B Feature: gene Location: 159127-159660 bp Feature: domain Description: PRK12846 Location: 159130-159595 bp Feature: domain Description: PRK12 846 Location: 159130-159595 bp Feature: gene Location: 159657-161723 bp Feature: domain Description: ligA Location: 159699-161712 bp Feature: domain Description: ligA Location: 159699-161712 bp Feature: gene Location: 161962-163329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 162295-162910 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 162 2 95-162 910 bp Feature: domain Description: GIIM Note: maturase Location: 162973-163177 bp Feature: domain Description: GIIM Note: maturase Location: 162 973-163177 bp Feature: gene Location: 163790-165058 bp Feature: domain Description: septum_zipA Location: 163802-164060 bp Feature: domain Description: septum_zipA Location: 163802 -164060 bp Feature: domain Description: ZipA_C Location: 164606-164978 bp Feature: domain Description: ZipA_C Location: 164606-164978 bp Feature: gene Location: 165177-168695 bp Feature: domain Description: SMC_prok_B Location: 165183-168660 bp Feature: domain Description: SMC_prok_B Location: 165183-168660 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK12846 (peptide deformylase; Reviewed), ligA (PRK14351), RVT-GII, GIIM (pfam08388), septum_zipA (TIGR02205), ZipA_C (smart00771), SMC_prok_B (TIGR02168)