myRT

myRT report for GCA_013409255.1_ASM1340925v1

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Seq: JACCAS010000001.1 Paraburkholderia bryophila strain H2C3C Ga0394401_01, whole genome shotgun sequence (4741853 bp)
Overview 1 RT 1: 2778032-2784090 bp 2 RT 2: 3134624-3146376 bp Neighborhood of RT #1 [2778032, 2784158] 2A0305 GlxA GyrI-like RVT-Retrons YdcF-like Neighborhood of RT #2 [3134624, 3146519] rpoB PRK00566 RVT-GII MASE1 PAS_3 YvaK Feature: gene Location: 2778032-2779435 bp Feature: domain Description: 2A0305 Location: 2778077-2779421 bp Feature: domain Description: 2A0305 Location: 2778077-2779421 bp Feature: gene Location: 2779692-2780558 bp Feature: domain Description: GlxA Location: 2779719-2780037 bp Feature: domain Description: GlxA Location: 277971 9-2780037 bp Feature: domain Description: GyrI-like Location: 2780091-2780553 bp Feature: domain Description: GyrI-like Location: 2780091 -2780553 bp Feature: gene Location: 2781143-2782516 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2781608-2782247 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2781 608-2782247 bp Feature: gene Location: 2782572-2783333 bp Feature: gene Location: 2783523-2784158 bp Feature: domain Description: YdcF-like Location: 2783697-2784090 bp Feature: domain Description: YdcF-like Location: 2783697-2784090 bp Feature: gene Location: 3134624-3138730 bp Feature: domain Description: rpoB Location: 3134648-3138716 bp Feature: domain Description: rpoB Location: 31 34648-31 3871 6 bp Feature: gene Location: 3138752-3142990 bp Feature: domain Description: PRK00566 Location: 3138791-3142916 bp Feature: domain Description: PRK00566 Location: 31 38791 -31 4291 6 bp Feature: gene Location: 3143454-3144185 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3143787-3144123 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 43787-31 441 23 bp Feature: gene Location: 3144324-3145622 bp Feature: domain Description: MASE1 Location: 3144372-3145209 bp Feature: domain Description: MASE1 Location: 31 44372-31 45209 bp Feature: domain Description: PAS_3 Location: 3145326-3145593 bp Feature: domain Description: PAS_3 Location: 31 45326-31 45593 bp Feature: gene Location: 3145626-3146519 bp Feature: domain Description: YvaK Location: 3145644-3146376 bp Feature: domain Description: YvaK Location: 31 45644-31 46376 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT 2A0305 (TIGR00908), GlxA (COG4977), GyrI-like (pfam06445), RVT-Retrons, YdcF-like (cl00630), rpoB (TIGR02013), PRK00566 (DNA-directed RNA polymerase subunit beta'; Provisional), RVT-GII, MASE1 (pfam05231), PAS_3 (pfam08447)
YvaK (COG1647)

Seq: JACCAS010000002.1 Paraburkholderia bryophila strain H2C3C Ga0394401_02, whole genome shotgun sequence (3533816 bp)
Overview 1 RT 1: 1369889-1376709 bp Neighborhood of RT #1 [1369889, 1376885] BRR2 BRR2 DUF1837 RVT-G2L4 HNH_2 Feature: gene Location: 1369889-1373053 bp Feature: domain Description: BRR2 Location: 1370609-1371200 bp Feature: domain Description: BRR2 Location: 1370609-13712 00 bp Feature: domain Description: BRR2 Location: 1371638-1371887 bp Feature: domain Description: BRR2 Location: 1371638-1371887 bp Feature: gene Location: 1373043-1373849 bp Feature: domain Description: DUF1837 Location: 1373184-1373490 bp Feature: domain Description: DUF1837 Location: 1373184-1373490 bp Feature: gene Location: 1374054-1375358 bp Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 1374276-1374849 bp Feature: RT Description: RVT-G2 L4 Note: G2 L4 RT Location: 13742 76-1374849 bp Feature: gene Location: 1375448-1375609 bp Feature: gene Location: 1376019-1376885 bp Feature: domain Description: HNH_2 Location: 1376553-1376709 bp Feature: domain Description: HNH_2 Location: 1376553-1376709 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BRR2 (COG1204), DUF1837 (pfam08878), RVT-G2L4, HNH_2 (pfam13391)