myRT

myRT report for GCA_013409525.1_ASM1340952v1

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Seq: JACCBQ010000001.1 Paraburkholderia metrosideri strain M3D6C Ga0393947_01, whole genome shotgun sequence (4193438 bp)
Overview 1 RT 1: 1458975-1471641 bp Neighborhood of RT #1 [1458975, 1471641] TldD UvrA UvrA UvrA UvrA RVT_N RVT-GII Sigma70_r3 HTH_Hin_like HTH_23 HTH_23 HTH_23 Feature: gene Location: 1458975-1460411 bp Feature: domain Description: TldD Location: 1459014-1460403 bp Feature: domain Description: TldD Location: 1 45901 4-1 460403 bp Feature: gene Location: 1460570-1466455 bp Feature: domain Description: UvrA Location: 1460585-1463522 bp Feature: domain Description: UvrA Location: 1 460585-1 463522 bp Feature: domain Description: UvrA Location: 1463624-1464542 bp Feature: domain Description: UvrA Location: 1 463624-1 464542 bp Feature: domain Description: UvrA Location: 1464599-1465439 bp Feature: domain Description: UvrA Location: 1 464599-1 465439 bp Feature: domain Description: UvrA Location: 1465523-1466405 bp Feature: domain Description: UvrA Location: 1 465523-1 466405 bp Feature: gene Location: 1467195-1467869 bp Feature: domain Description: RVT_N Location: 1467243-1467486 bp Feature: domain Description: RVT_N Location: 1 467243-1 467486 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1467531-1467714 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 467531 -1 46771 4 bp Feature: gene Location: 1467891-1471376 bp Feature: domain Description: Sigma70_r3 Location: 1470198-1470261 bp Feature: domain Description: Sigma70_r3 Location: 1 4701 98-1 470261 bp Feature: domain Description: HTH_Hin_like Location: 1470288-1470405 bp Feature: domain Description: HTH_Hin_like Location: 1 470288-1 470405 bp Feature: domain Description: HTH_23 Location: 1470465-1470567 bp Feature: domain Description: HTH_23 Location: 1 470465-1 470567 bp Feature: domain Description: HTH_23 Location: 1470621-1470702 bp Feature: domain Description: HTH_23 Location: 1 470621 -1 470702 bp Feature: domain Description: HTH_23 Location: 1470780-1470873 bp Feature: domain Description: HTH_23 Location: 1 470780-1 470873 bp Feature: gene Location: 1471426-1471641 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TldD (COG0312), UvrA (COG0178), RVT_N (pfam13655), RVT-GII, Sigma70_r3 (pfam04539), HTH_Hin_like (cd00569), HTH_23 (pfam13384)

Seq: JACCBQ010000002.1 Paraburkholderia metrosideri strain M3D6C Ga0393947_02, whole genome shotgun sequence (3311465 bp)
Overview 1 RT 1: 1091735-1095918 bp Neighborhood of RT #1 [1091735, 1095918] MR_like GntR RVT-GII PBP1_ABC_LIVBP_like Feature: gene Location: 1091735-1092874 bp Feature: domain Description: MR_like Location: 1091741-1092818 bp Feature: domain Description: MR_like Location: 1091741-1092 818 bp Feature: gene Location: 1092942-1093637 bp Feature: domain Description: GntR Location: 1092969-1093593 bp Feature: domain Description: GntR Location: 1092 969-1093593 bp Feature: gene Location: 1094036-1094473 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1094045-1094252 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1094045-10942 52 bp Feature: gene Location: 1094591-1095736 bp Feature: domain Description: PBP1_ABC_LIVBP_like Location: 1094696-1095704 bp Feature: domain Description: PBP1_ABC_LIVBP_like Location: 1094696-1095704 bp Feature: gene Location: 1095784-1095918 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MR_like (cd03316), GntR (pfam00392), RVT-GII, PBP1_ABC_LIVBP_like

Seq: JACCBQ010000004.1 Paraburkholderia metrosideri strain M3D6C Ga0393947_04, whole genome shotgun sequence (50638 bp)
Overview 1 RT 1: 28145-33269 bp Neighborhood of RT #1 [28145, 33316] dnaE2 RVT-Retrons AAA_21 AAA_21 DUF3268 Feature: gene Location: 28145-29389 bp Feature: domain Description: dnaE2 Location: 28151-29387 bp Feature: domain Description: dnaE2 Location: 28151-293 87 bp Feature: gene Location: 29436-29750 bp Feature: gene Location: 30259-31227 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 30385-30946 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 03 85-3 0946 bp Feature: gene Location: 31224-32567 bp Feature: domain Description: AAA_21 Location: 31305-31455 bp Feature: domain Description: AAA_21 Location: 3 13 05-3 1455 bp Feature: domain Description: AAA_21 Location: 31797-31968 bp Feature: domain Description: AAA_21 Location: 3 1797-3 1968 bp Feature: gene Location: 32858-33316 bp Feature: domain Description: DUF3268 Location: 32897-33269 bp Feature: domain Description: DUF3 268 Location: 3 2897-3 3 269 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dnaE2 (PRK05672), RVT-Retrons, AAA_21 (pfam13304), DUF3268 (pfam11672)