myRT

myRT report for GCA_013409575.1_ASM1340957v1

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Seq: JACCCY010000001.1 Macellibacteroides fermentans strain DSM 23697 Ga0376912_01, whole genome shotgun sequence (1204208 bp)
Overview 1 RT 1: 205580-210393 bp 2 RT 2: 472413-476220 bp 3 RT 3: 489907-492275 bp 4 RT 4: 588010-591005 bp 5 RT 5: 891404-897570 bp Neighborhood of RT #1 [205580, 212006] PRK05218 RVT-GII Pat_PNPLA6_PNPLA7_NTE1_like Neighborhood of RT #2 [472413, 476231] DUF1080 RVT-GII AGE Neighborhood of RT #3 [489907, 492275] RVT-GII Neighborhood of RT #4 [588010, 591005] galactose_mutarotase_like RVT-GII Neighborhood of RT #5 [891404, 897590] Creatininase HATPase_c_3 RVT-UG7 rmlC Feature: gene Location: 205580-207628 bp Feature: domain Description: PRK05218 Location: 205592-207626 bp Feature: domain Description: PRK0521 8 Location: 205592-207626 bp Feature: gene Location: 207916-208077 bp Feature: gene Location: 208182-209147 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 208521-209139 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 208521 -2091 39 bp Feature: gene Location: 209173-209319 bp Feature: gene Location: 209691-212006 bp Feature: domain Description: Pat_PNPLA6_PNPLA7_NTE1_like Location: 209760-210393 bp Feature: domain Description: Pat_PNPLA6_PNPLA7_NTE1 _like Location: 209760-21 0393 bp Feature: gene Location: 472413-473063 bp Feature: domain Description: DUF1080 Location: 472497-473052 bp Feature: domain Description: DUF1 080 Location: 472497-473052 bp Feature: gene Location: 473349-473510 bp Feature: gene Location: 473615-474580 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 473954-474572 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 473954-474572 bp Feature: gene Location: 474606-474752 bp Feature: gene Location: 475047-476231 bp Feature: domain Description: AGE Location: 475062-476220 bp Feature: domain Description: AGE Location: 475062-476220 bp Feature: gene Location: 489907-490284 bp Feature: gene Location: 490471-490632 bp Feature: gene Location: 490737-491702 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 491076-491694 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 491 076-491 694 bp Feature: gene Location: 491747-491875 bp Feature: gene Location: 492093-492275 bp Feature: gene Location: 588010-589140 bp Feature: domain Description: galactose_mutarotase_like Location: 588148-589123 bp Feature: domain Description: galactose_mutarotase_like Location: 5881 48-5891 23 bp Feature: gene Location: 589413-589574 bp Feature: gene Location: 589679-590365 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 589739-590357 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 589739-590357 bp Feature: gene Location: 590565-590702 bp Feature: gene Location: 590685-591005 bp Feature: gene Location: 891404-892282 bp Feature: domain Description: Creatininase Location: 891485-892187 bp Feature: domain Description: Creatininase Location: 891 485-8921 87 bp Feature: gene Location: 892734-894785 bp Feature: domain Description: HATPase_c_3 Location: 892890-893145 bp Feature: domain Description: HATPase_c_3 Location: 892890-8931 45 bp Feature: gene Location: 894874-896448 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 895294-895684 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 895294-895684 bp Feature: gene Location: 896754-896921 bp Feature: gene Location: 896985-897590 bp Feature: domain Description: rmlC Location: 897042-897570 bp Feature: domain Description: rmlC Location: 897042-897570 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05218 (heat shock protein 90; Provisional), RVT-GII, Pat_PNPLA6_PNPLA7_NTE1_like (cd07205), DUF1080 (pfam06439), AGE (cl23840), galactose_mutarotase_like (cd09019), Creatininase (pfam02633), HATPase_c_3 (pfam13589), RVT-UG7, rmlC (TIGR01221)

Seq: JACCCY010000002.1 Macellibacteroides fermentans strain DSM 23697 Ga0376912_02, whole genome shotgun sequence (1059669 bp)
Overview 1 RT 1: 87620-91664 bp 2 RT 2: 265281-268984 bp 3 RT 3: 319807-322705 bp 4 RT 4: 363770-368472 bp 5 RT 5: 491445-494468 bp 6 RT 6: 612354-616032 bp 7 RT 7: 648231-652518 bp 8 RT 8: 825694-830832 bp 9 RT 9: 846086-849409 bp 10 RT 10: 888062-895763 bp 11 RT 11: 916565-921237 bp Neighborhood of RT #1 [87620, 91687] RVT-DGRs PHA02517 Neighborhood of RT #2 [265281, 268984] RVT-GII GIIM M28_like_PA M28_like_PA Neighborhood of RT #3 [319807, 322705] yflN-like_MBL-fold RVT-GII GIIM Neighborhood of RT #4 [363770, 368472] COG3464 HTH_38 COG3464 RVT-GII GIIM Neighborhood of RT #5 [491445, 494617] RVT-GII COG4299 Neighborhood of RT #6 [612354, 616040] COG3464 HTH_38 COG3464 RVT-GII NimA Neighborhood of RT #7 [648231, 652565] RVT-GII Glyco_hydro_20b GH20_chitobiase-like Fn3_assoc F5_F8_type_C Neighborhood of RT #8 [825694, 830867] SusD RVT-GII MviM MviM Neighborhood of RT #9 [846086, 849432] RVT-GII DUF1080 PRK08392 Neighborhood of RT #10 [888062, 895763] MrcB MrcB GH97_N Glyco_hydro_97 GH97_C RVT-GII GIIM Neighborhood of RT #11 [916565, 921785] aman2_put RVT-GII DUF3667 Feature: gene Location: 87620-88798 bp Feature: gene Location: 88818-88970 bp Feature: gene Location: 89062-90198 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 89272-89860 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 892 72 -89860 bp Feature: gene Location: 90321-90665 bp Feature: gene Location: 90866-91687 bp Feature: domain Description: PHA02517 Location: 91013-91664 bp Feature: domain Description: PHA02 517 Location: 91013-91664 bp Feature: gene Location: 265281-265610 bp Feature: gene Location: 265617-265760 bp Feature: gene Location: 265826-267088 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 266036-266693 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 66036-2 66693 bp Feature: domain Description: GIIM Note: maturase Location: 266774-266978 bp Feature: domain Description: GIIM Note: maturase Location: 2 66774-2 66978 bp Feature: gene Location: 267299-268303 bp Feature: domain Description: M28_like_PA Location: 267428-267584 bp Feature: domain Description: M2 8_like_PA Location: 2 6742 8-2 67584 bp Feature: domain Description: M28_like_PA Location: 267638-268298 bp Feature: domain Description: M2 8_like_PA Location: 2 67638-2 682 98 bp Feature: gene Location: 268313-268984 bp Feature: gene Location: 319807-320517 bp Feature: domain Description: yflN-like_MBL-fold Location: 319843-320479 bp Feature: domain Description: yflN-like_MBL-fold Location: 319843-32 0479 bp Feature: gene Location: 320837-320995 bp Feature: gene Location: 321001-322263 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 321211-321868 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 12 11-32 1868 bp Feature: domain Description: GIIM Note: maturase Location: 321949-322153 bp Feature: domain Description: GIIM Note: maturase Location: 32 1949-32 2 153 bp Feature: gene Location: 322314-322511 bp Feature: gene Location: 322574-322705 bp Feature: gene Location: 363770-365491 bp Feature: domain Description: COG3464 Location: 363905-364640 bp Feature: domain Description: COG3464 Location: 363905-364640 bp Feature: domain Description: HTH_38 Location: 364724-364805 bp Feature: domain Description: HTH_38 Location: 36472 4-364805 bp Feature: domain Description: COG3464 Location: 365198-365477 bp Feature: domain Description: COG3464 Location: 365198-365477 bp Feature: gene Location: 365749-365910 bp Feature: gene Location: 365913-367175 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366123-366780 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36612 3-366780 bp Feature: domain Description: GIIM Note: maturase Location: 366861-367065 bp Feature: domain Description: GIIM Note: maturase Location: 366861-367065 bp Feature: gene Location: 367391-367717 bp Feature: gene Location: 368320-368472 bp Feature: gene Location: 491445-491582 bp Feature: gene Location: 491690-491836 bp Feature: gene Location: 491862-492827 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 492201-492819 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 492 2 01-492 819 bp Feature: gene Location: 492932-493093 bp Feature: gene Location: 493436-494617 bp Feature: domain Description: COG4299 Location: 493457-494468 bp Feature: domain Description: COG42 99 Location: 493457-494468 bp Feature: gene Location: 612354-612596 bp Feature: gene Location: 612626-614347 bp Feature: domain Description: COG3464 Location: 612761-613484 bp Feature: domain Description: COG3464 Location: 612 761-613484 bp Feature: domain Description: HTH_38 Location: 613580-613661 bp Feature: domain Description: HTH_38 Location: 613580-613661 bp Feature: domain Description: COG3464 Location: 614054-614333 bp Feature: domain Description: COG3464 Location: 614054-614333 bp Feature: gene Location: 614523-614936 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 614529-614928 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61452 9-61492 8 bp Feature: gene Location: 615041-615202 bp Feature: gene Location: 615561-616040 bp Feature: domain Description: NimA Location: 615588-616032 bp Feature: domain Description: NimA Location: 615588-616032 bp Feature: gene Location: 648231-648428 bp Feature: gene Location: 648536-648673 bp Feature: gene Location: 648710-649675 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 649049-649667 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 649049-649667 bp Feature: gene Location: 649780-649941 bp Feature: gene Location: 650238-652565 bp Feature: domain Description: Glyco_hydro_20b Location: 650331-650712 bp Feature: domain Description: Glyco_hydro_2 0b Location: 650331-650712 bp Feature: domain Description: GH20_chitobiase-like Location: 650721-651807 bp Feature: domain Description: GH2 0_chitobiase-like Location: 65072 1-651807 bp Feature: domain Description: Fn3_assoc Location: 651924-652071 bp Feature: domain Description: Fn3_assoc Location: 65192 4-652 071 bp Feature: domain Description: F5_F8_type_C Location: 652191-652518 bp Feature: domain Description: F5_F8_type_C Location: 652 191-652 518 bp Feature: gene Location: 825694-827436 bp Feature: domain Description: SusD Location: 825814-827248 bp Feature: domain Description: SusD Location: 82 5814-82 72 48 bp Feature: gene Location: 827729-827866 bp Feature: gene Location: 827903-828868 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 828242-828860 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82 82 42 -82 8860 bp Feature: gene Location: 828973-829134 bp Feature: gene Location: 829572-830867 bp Feature: domain Description: MviM Location: 829611-830238 bp Feature: domain Description: MviM Location: 82 9611-8302 38 bp Feature: domain Description: MviM Location: 830451-830832 bp Feature: domain Description: MviM Location: 830451-830832 bp Feature: gene Location: 846086-846247 bp Feature: gene Location: 846355-846492 bp Feature: gene Location: 846529-847494 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 846868-847486 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 846868-847486 bp Feature: gene Location: 847599-847760 bp Feature: gene Location: 848047-849432 bp Feature: domain Description: DUF1080 Location: 848125-848632 bp Feature: domain Description: DUF1080 Location: 84812 5-848632 bp Feature: domain Description: PRK08392 Location: 849055-849409 bp Feature: domain Description: PRK08392 Location: 849055-849409 bp Feature: gene Location: 888062-890473 bp Feature: domain Description: MrcB Location: 888182-889295 bp Feature: domain Description: MrcB Location: 888182 -8892 95 bp Feature: domain Description: MrcB Location: 889406-890333 bp Feature: domain Description: MrcB Location: 889406-890333 bp Feature: gene Location: 890680-892815 bp Feature: domain Description: GH97_N Location: 890746-891541 bp Feature: domain Description: GH97_N Location: 890746-891541 bp Feature: domain Description: Glyco_hydro_97 Location: 891556-892459 bp Feature: domain Description: Glyco_hydro_97 Location: 891556-892 459 bp Feature: domain Description: GH97_C Location: 892468-892768 bp Feature: domain Description: GH97_C Location: 892 468-892 768 bp Feature: gene Location: 893079-894341 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 893289-893946 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8932 89-893946 bp Feature: domain Description: GIIM Note: maturase Location: 894027-894231 bp Feature: domain Description: GIIM Note: maturase Location: 89402 7-8942 31 bp Feature: gene Location: 894557-894967 bp Feature: gene Location: 895560-895763 bp Feature: gene Location: 916565-918850 bp Feature: domain Description: aman2_put Location: 916661-918800 bp Feature: domain Description: aman2 _put Location: 916661-918800 bp Feature: gene Location: 919150-919278 bp Feature: gene Location: 919323-920288 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 919662-920280 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 919662 -92 02 80 bp Feature: gene Location: 920393-920554 bp Feature: gene Location: 920883-921785 bp Feature: domain Description: DUF3667 Location: 921108-921237 bp Feature: domain Description: DUF3667 Location: 92 1108-92 12 37 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), M28_like_PA (cd05661), yflN-like_MBL-fold (cd07721), COG3464 (Transposase ), HTH_38 (pfam13936), COG4299 (Predicted acyltransferase ), NimA (COG3467)
Glyco_hydro_20b (pfam02838), GH20_chitobiase-like (cd06563), Fn3_assoc (pfam13287), F5_F8_type_C (pfam00754), SusD (NF033071), MviM (COG0673), DUF1080 (pfam06439), PRK08392 (hypothetical protein; Provisional), MrcB (COG0744), GH97_N (pfam14508)
Glyco_hydro_97 (pfam10566), GH97_C (pfam14509), aman2_put (TIGR01180), DUF3667 (pfam12412)

Seq: JACCCY010000003.1 Macellibacteroides fermentans strain DSM 23697 Ga0376912_03, whole genome shotgun sequence (817433 bp)
Overview 1 RT 1: 151534-155795 bp 2 RT 2: 398727-405568 bp 3 RT 3: 417113-420502 bp 4 RT 4: 544429-548985 bp Neighborhood of RT #1 [151534, 156436] RVT-GII GIIM PRK06526 HTH_23 COG4584 Neighborhood of RT #2 [398727, 405597] NAPRTase RVT-GII GIIM AfuC Fn3_assoc F5_F8_type_C LytT Neighborhood of RT #3 [417113, 420502] TolC RVT-GII Neighborhood of RT #4 [544429, 549005] HsdM RVT-GII GIIM ZnuC ZntC Feature: gene Location: 151534-151935 bp Feature: gene Location: 152021-152428 bp Feature: gene Location: 152644-153906 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 152854-153511 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 152854-153 511 bp Feature: domain Description: GIIM Note: maturase Location: 153592-153796 bp Feature: domain Description: GIIM Note: maturase Location: 153 592-153 796 bp Feature: gene Location: 154122-154895 bp Feature: domain Description: PRK06526 Location: 154155-154866 bp Feature: domain Description: PRK06526 Location: 154155-154866 bp Feature: gene Location: 154898-156436 bp Feature: domain Description: HTH_23 Location: 154904-155027 bp Feature: domain Description: HTH_23 Location: 154904-155027 bp Feature: domain Description: COG4584 Location: 155231-155795 bp Feature: domain Description: COG4584 Location: 15523 1-155795 bp Feature: gene Location: 398727-399899 bp Feature: domain Description: NAPRTase Location: 398736-399894 bp Feature: domain Description: NAPRTase Location: 3 9873 6-3 99894 bp Feature: gene Location: 400558-400887 bp Feature: gene Location: 401103-402365 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 401313-401970 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4013 13 -401970 bp Feature: domain Description: GIIM Note: maturase Location: 402051-402255 bp Feature: domain Description: GIIM Note: maturase Location: 402051-402255 bp Feature: gene Location: 402587-404644 bp Feature: domain Description: AfuC Location: 402668-403982 bp Feature: domain Description: AfuC Location: 402668-403 982 bp Feature: domain Description: Fn3_assoc Location: 404078-404243 bp Feature: domain Description: Fn3 _assoc Location: 404078-404243 bp Feature: domain Description: F5_F8_type_C Location: 404309-404603 bp Feature: domain Description: F5_F8_type_C Location: 4043 09-404603 bp Feature: gene Location: 404749-405597 bp Feature: domain Description: LytT Location: 405124-405568 bp Feature: domain Description: LytT Location: 405124-405568 bp Feature: gene Location: 417113-418432 bp Feature: domain Description: TolC Location: 417200-418376 bp Feature: domain Description: TolC Location: 417200-4183 76 bp Feature: gene Location: 418814-418975 bp Feature: gene Location: 419080-420045 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 419419-420037 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 419419-42003 7 bp Feature: gene Location: 420071-420217 bp Feature: gene Location: 420200-420502 bp Feature: gene Location: 544429-544632 bp Feature: domain Description: HsdM Location: 544450-544570 bp Feature: domain Description: HsdM Location: 544450-544570 bp Feature: gene Location: 545103-545486 bp Feature: gene Location: 545702-546964 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 545912-546569 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 545912-546569 bp Feature: domain Description: GIIM Note: maturase Location: 546650-546854 bp Feature: domain Description: GIIM Note: maturase Location: 546650-546854 bp Feature: gene Location: 547337-548119 bp Feature: domain Description: ZnuC Location: 547340-547988 bp Feature: domain Description: ZnuC Location: 5473 40-547988 bp Feature: gene Location: 548103-549005 bp Feature: domain Description: ZntC Location: 548172-548985 bp Feature: domain Description: ZntC Location: 548172-548985 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK06526 (transposase; Provisional), HTH_23 (pfam13384), COG4584 (Transposase ), NAPRTase (TIGR01514), AfuC (COG3669), Fn3_assoc (pfam13287), F5_F8_type_C (pfam00754), LytT (COG3279)
TolC (COG1538), HsdM (COG0286), ZnuC (COG1121), ZntC (cd01018)