myRT

myRT report for GCA_013410245.1_ASM1341024v1

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Seq: JACCGF010000001.1 Paraburkholderia metrosideri strain M3D4D Ga0417146_01, whole genome shotgun sequence (4470191 bp)
Overview 1 RT 1: 226940-239606 bp Neighborhood of RT #1 [226940, 239606] TldD UvrA UvrA UvrA UvrA RVT_N RVT-GII Sigma70_r3 HTH_Hin_like HTH_23 HTH_23 HTH_23 Feature: gene Location: 226940-228376 bp Feature: domain Description: TldD Location: 226979-228368 bp Feature: domain Description: TldD Location: 226979-228368 bp Feature: gene Location: 228535-234420 bp Feature: domain Description: UvrA Location: 228550-231487 bp Feature: domain Description: UvrA Location: 228550-231 487 bp Feature: domain Description: UvrA Location: 231589-232507 bp Feature: domain Description: UvrA Location: 231 589-232507 bp Feature: domain Description: UvrA Location: 232564-233404 bp Feature: domain Description: UvrA Location: 232564-233404 bp Feature: domain Description: UvrA Location: 233488-234370 bp Feature: domain Description: UvrA Location: 233488-234370 bp Feature: gene Location: 235160-235834 bp Feature: domain Description: RVT_N Location: 235208-235451 bp Feature: domain Description: RVT_N Location: 235208-235451 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 235496-235679 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 235496-235679 bp Feature: gene Location: 235856-239341 bp Feature: domain Description: Sigma70_r3 Location: 238163-238226 bp Feature: domain Description: Sigma70_r3 Location: 2381 63-238226 bp Feature: domain Description: HTH_Hin_like Location: 238253-238370 bp Feature: domain Description: HTH_Hin_like Location: 238253-238370 bp Feature: domain Description: HTH_23 Location: 238430-238532 bp Feature: domain Description: HTH_23 Location: 238430-238532 bp Feature: domain Description: HTH_23 Location: 238586-238667 bp Feature: domain Description: HTH_23 Location: 238586-238667 bp Feature: domain Description: HTH_23 Location: 238745-238838 bp Feature: domain Description: HTH_23 Location: 238745-238838 bp Feature: gene Location: 239391-239606 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TldD (COG0312), UvrA (COG0178), RVT_N (pfam13655), RVT-GII, Sigma70_r3 (pfam04539), HTH_Hin_like (cd00569), HTH_23 (pfam13384)

Seq: JACCGF010000002.1 Paraburkholderia metrosideri strain M3D4D Ga0417146_02, whole genome shotgun sequence (3315266 bp)
Overview 1 RT 1: 324972-329099 bp Neighborhood of RT #1 [324972, 329155] PBP1_ABC_LIVBP_like RVT-GII GntR MR_like Feature: gene Location: 324972-325106 bp Feature: gene Location: 325154-326299 bp Feature: domain Description: PBP1_ABC_LIVBP_like Location: 325259-326267 bp Feature: domain Description: PBP1_ABC_LIVBP_like Location: 32 52 59-32 62 67 bp Feature: gene Location: 326417-326854 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 326426-326633 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 642 6-32 6633 bp Feature: gene Location: 327253-327948 bp Feature: domain Description: GntR Location: 327280-327904 bp Feature: domain Description: GntR Location: 32 72 80-32 7904 bp Feature: gene Location: 328016-329155 bp Feature: domain Description: MR_like Location: 328022-329099 bp Feature: domain Description: MR_like Location: 32 802 2 -32 9099 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PBP1_ABC_LIVBP_like, RVT-GII, GntR (pfam00392), MR_like (cd03316)

Seq: JACCGF010000004.1 Paraburkholderia metrosideri strain M3D4D Ga0417146_04, whole genome shotgun sequence (110673 bp)
Overview 1 RT 1: 58973-64097 bp Neighborhood of RT #1 [58973, 64144] dnaE2 RVT-Retrons AAA_21 AAA_21 DUF3268 Feature: gene Location: 58973-60217 bp Feature: domain Description: dnaE2 Location: 58979-60215 bp Feature: domain Description: dnaE2 Location: 58979-60215 bp Feature: gene Location: 60264-60578 bp Feature: gene Location: 61087-62055 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 61213-61774 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 61213 -61774 bp Feature: gene Location: 62052-63395 bp Feature: domain Description: AAA_21 Location: 62133-62283 bp Feature: domain Description: AAA_21 Location: 6213 3 -62283 bp Feature: domain Description: AAA_21 Location: 62625-62796 bp Feature: domain Description: AAA_21 Location: 62625-62796 bp Feature: gene Location: 63686-64144 bp Feature: domain Description: DUF3268 Location: 63725-64097 bp Feature: domain Description: DUF3 268 Location: 63 725-64097 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dnaE2 (PRK05672), RVT-Retrons, AAA_21 (pfam13304), DUF3268 (pfam11672)