myRT

myRT report for GCA_013410425.1_ASM1341042v1

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Seq: JACCFU010000001.1 Pseudomonas oleovorans strain B9D3A Ga0416736_01, whole genome shotgun sequence (2987250 bp)
Overview 1 RT 1: 502064-507022 bp 2 RT 2: 555816-563163 bp 3 RT 3: 1143329-1147988 bp 4 RT 4: 1172832-1178717 bp 5 RT 5: 1245915-1248439 bp 6 RT 6: 1799023-1803033 bp 7 RT 7: 2193180-2199022 bp 8 RT 8: 2230739-2239178 bp Neighborhood of RT #1 [502064, 507051] yjbJ OsmY RVT-GII GIIM polynuc_phos Neighborhood of RT #2 [555816, 563177] CHASE sensory_box PAS_4 TMAO_torS TMAO_torS TMAO_torS GIIM RVT-GII PRK10510 PRK10510 Neighborhood of RT #3 [1143329, 1148203] hisH hisB RVT-GII GIIM MFS_OFA_like Neighborhood of RT #4 [1172832, 1178746] OprD PAS_3 GGDEF RVT-GII GIIM OLE1 DDE_Tnp_ISL3 Neighborhood of RT #5 [1245915, 1248447] RVT-GII GIIM rpmG Neighborhood of RT #6 [1799023, 1803047] RVT-GII GIIM PRK10748 XerC Neighborhood of RT #7 [2193180, 2199033] type_I_sec_TolC RVT-GII GIIM PRK05749 LysR Neighborhood of RT #8 [2230739, 2239264] PRK01117 RVT-GII GIIM Tar PRK11642 Feature: gene Location: 502064-502267 bp Feature: domain Description: yjbJ Location: 502067-502262 bp Feature: domain Description: yjbJ Location: 502067-502262 bp Feature: gene Location: 502320-502673 bp Feature: domain Description: OsmY Location: 502365-502653 bp Feature: domain Description: OsmY Location: 502365-502653 bp Feature: gene Location: 503042-504367 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 503303-503918 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 503303-50391 8 bp Feature: domain Description: GIIM Note: maturase Location: 503972-504200 bp Feature: domain Description: GIIM Note: maturase Location: 503972-504200 bp Feature: gene Location: 504303-504782 bp Feature: gene Location: 504946-507051 bp Feature: domain Description: polynuc_phos Location: 504973-507022 bp Feature: domain Description: polynuc_phos Location: 504973-507022 bp Feature: gene Location: 555816-559574 bp Feature: domain Description: CHASE Location: 556107-556662 bp Feature: domain Description: CHASE Location: 5561 07-556662 bp Feature: domain Description: sensory_box Location: 556923-557256 bp Feature: domain Description: sensory_box Location: 556923-557256 bp Feature: domain Description: PAS_4 Location: 557271-557604 bp Feature: domain Description: PAS_4 Location: 557271 -557604 bp Feature: domain Description: TMAO_torS Location: 557613-558654 bp Feature: domain Description: TMAO_torS Location: 55761 3-558654 bp Feature: domain Description: TMAO_torS Location: 558753-558990 bp Feature: domain Description: TMAO_torS Location: 558753-558990 bp Feature: domain Description: TMAO_torS Location: 559152-559533 bp Feature: domain Description: TMAO_torS Location: 5591 52-559533 bp Feature: gene Location: 559803-560210 bp Feature: domain Description: GIIM Note: maturase Location: 559815-560043 bp Feature: domain Description: GIIM Note: maturase Location: 55981 5-560043 bp Feature: gene Location: 560268-561134 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 560529-561120 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 560529-561 1 20 bp Feature: gene Location: 561708-562364 bp Feature: domain Description: PRK10510 Location: 561711-562362 bp Feature: domain Description: PRK1 051 0 Location: 561 71 1 -562362 bp Feature: gene Location: 562509-563177 bp Feature: domain Description: PRK10510 Location: 562527-563163 bp Feature: domain Description: PRK1 051 0 Location: 562527-5631 63 bp Feature: gene Location: 1143329-1143967 bp Feature: domain Description: hisH Location: 1143332-1143956 bp Feature: domain Description: hisH Location: 1 1 43332-1 1 43956 bp Feature: gene Location: 1143968-1144573 bp Feature: domain Description: hisB Location: 1143989-1144571 bp Feature: domain Description: hisB Location: 1 1 43989-1 1 44571 bp Feature: gene Location: 1144740-1146107 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1145070-1145688 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 45070-1 1 45688 bp Feature: domain Description: GIIM Note: maturase Location: 1145745-1145955 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 45745-1 1 45955 bp Feature: gene Location: 1146199-1146699 bp Feature: gene Location: 1146545-1148203 bp Feature: domain Description: MFS_OFA_like Location: 1146632-1147988 bp Feature: domain Description: MFS_OFA_like Location: 1 1 46632-1 1 47988 bp Feature: gene Location: 1172832-1174151 bp Feature: domain Description: OprD Location: 1172901-1174143 bp Feature: domain Description: OprD Location: 1 1 72901 -1 1 741 43 bp Feature: gene Location: 1174576-1175559 bp Feature: domain Description: PAS_3 Location: 1174759-1174978 bp Feature: domain Description: PAS_3 Location: 1 1 74759-1 1 74978 bp Feature: domain Description: GGDEF Location: 1175029-1175551 bp Feature: domain Description: GGDEF Location: 1 1 75029-1 1 75551 bp Feature: gene Location: 1175696-1177063 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1176026-1176644 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 76026-1 1 76644 bp Feature: domain Description: GIIM Note: maturase Location: 1176701-1176911 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 76701 -1 1 7691 1 bp Feature: gene Location: 1177155-1177397 bp Feature: gene Location: 1177496-1178746 bp Feature: domain Description: OLE1 Location: 1177583-1178321 bp Feature: domain Description: OLE1 Location: 1 1 77583-1 1 78321 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 1178369-1178717 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 1 1 78369-1 1 7871 7 bp Feature: gene Location: 1245915-1246139 bp Feature: gene Location: 1246254-1246382 bp Feature: gene Location: 1246389-1247714 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1246650-1247265 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 246650-1 247265 bp Feature: domain Description: GIIM Note: maturase Location: 1247319-1247547 bp Feature: domain Description: GIIM Note: maturase Location: 1 24731 9-1 247547 bp Feature: gene Location: 1247650-1248129 bp Feature: gene Location: 1248292-1248447 bp Feature: domain Description: rpmG Location: 1248295-1248439 bp Feature: domain Description: rpmG Location: 1 248295-1 248439 bp Feature: gene Location: 1799023-1799346 bp Feature: gene Location: 1799504-1799983 bp Feature: gene Location: 1799919-1801244 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1800180-1800795 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 8001 80-1 800795 bp Feature: domain Description: GIIM Note: maturase Location: 1800849-1801077 bp Feature: domain Description: GIIM Note: maturase Location: 1 800849-1 801 077 bp Feature: gene Location: 1801447-1802148 bp Feature: domain Description: PRK10748 Location: 1801456-1802131 bp Feature: domain Description: PRK1 0748 Location: 1 801 456-1 8021 31 bp Feature: gene Location: 1802145-1803047 bp Feature: domain Description: XerC Location: 1802154-1803033 bp Feature: domain Description: XerC Location: 1 8021 54-1 803033 bp Feature: gene Location: 2193180-2193374 bp Feature: gene Location: 2193549-2194991 bp Feature: domain Description: type_I_sec_TolC Location: 2193636-2194902 bp Feature: domain Description: type_I_sec_TolC Location: 21 93636-21 94902 bp Feature: gene Location: 2195614-2196465 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2195710-2196016 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 9571 0-21 9601 6 bp Feature: domain Description: GIIM Note: maturase Location: 2196070-2196298 bp Feature: domain Description: GIIM Note: maturase Location: 21 96070-21 96298 bp Feature: gene Location: 2196678-2197943 bp Feature: domain Description: PRK05749 Location: 2196681-2197938 bp Feature: domain Description: PRK05749 Location: 21 96681 -21 97938 bp Feature: gene Location: 2198146-2199033 bp Feature: domain Description: LysR Location: 2198158-2199022 bp Feature: domain Description: LysR Location: 21 981 58-21 99022 bp Feature: gene Location: 2230739-2232034 bp Feature: domain Description: PRK01117 Location: 2230748-2232029 bp Feature: domain Description: PRK01 1 1 7 Location: 2230748-2232029 bp Feature: gene Location: 2232197-2232676 bp Feature: gene Location: 2232612-2233937 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2232873-2233488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2232873-2233488 bp Feature: domain Description: GIIM Note: maturase Location: 2233542-2233770 bp Feature: domain Description: GIIM Note: maturase Location: 2233542-2233770 bp Feature: gene Location: 2234118-2236052 bp Feature: domain Description: Tar Location: 2234907-2236050 bp Feature: domain Description: Tar Location: 2234907-2236050 bp Feature: gene Location: 2236742-2239264 bp Feature: domain Description: PRK11642 Location: 2236760-2239178 bp Feature: domain Description: PRK1 1 642 Location: 2236760-22391 78 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT yjbJ (COG3237), OsmY (COG2823), RVT-GII, GIIM (pfam08388), polynuc_phos (TIGR03591), CHASE (smart01079), sensory_box (TIGR00229), PAS_4 (pfam08448), TMAO_torS (TIGR02956), PRK10510 (OmpA family lipoprotein)
hisH (PRK14004), hisB (PRK13598), MFS_OFA_like (cd17353), OprD (pfam03573), PAS_3 (pfam08447), GGDEF (TIGR00254), OLE1 (COG1398), DDE_Tnp_ISL3 (pfam01610), rpmG (PRK00595), PRK10748 (5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB)
XerC (COG4973), type_I_sec_TolC (TIGR01844), PRK05749 (3-deoxy-D-manno-octulosonic-acid transferase; Reviewed), LysR (COG0583), PRK01117 (adenylosuccinate synthetase; Provisional), Tar (COG0840), PRK11642 (ribonuclease R)

Seq: JACCFU010000002.1 Pseudomonas oleovorans strain B9D3A Ga0416736_02, whole genome shotgun sequence (1835113 bp)
Overview 1 RT 1: 338137-343182 bp 2 RT 2: 351439-355793 bp 3 RT 3: 962773-965978 bp 4 RT 4: 1276939-1287595 bp 5 RT 5: 1667821-1674934 bp Neighborhood of RT #1 [338137, 343187] PRK01712 RVT-GII GIIM DUF4124 SmpA_OmlA MgtE Neighborhood of RT #2 [351439, 355879] IstB_IS21_ATP IstB_IS21 RVT-GII GIIM Arc PRK09984 Neighborhood of RT #3 [962773, 966037] GIIM RVT-GII IstB_IS21_ATP IstB_IS21 Neighborhood of RT #4 [1276939, 1287624] recB recC RVT-GII GIIM Arm-DNA-bind_3 INT_P4_C Neighborhood of RT #5 [1667821, 1674939] mutS1 PreA DUF3470 RVT-GII GIIM PRK05657 Feature: gene Location: 338137-338322 bp Feature: domain Description: PRK01712 Location: 338140-338305 bp Feature: domain Description: PRK01712 Location: 338140-338305 bp Feature: gene Location: 339147-339389 bp Feature: gene Location: 339481-340833 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 339796-340414 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 339796-340414 bp Feature: domain Description: GIIM Note: maturase Location: 340471-340681 bp Feature: domain Description: GIIM Note: maturase Location: 340471-340681 bp Feature: gene Location: 340927-341421 bp Feature: domain Description: DUF4124 Location: 340984-341080 bp Feature: domain Description: DUF412 4 Location: 340984-341080 bp Feature: domain Description: SmpA_OmlA Location: 341257-341416 bp Feature: domain Description: SmpA_OmlA Location: 3412 57-341416 bp Feature: gene Location: 341745-343187 bp Feature: domain Description: MgtE Location: 341868-343182 bp Feature: domain Description: MgtE Location: 341868-343182 bp Feature: gene Location: 351439-352194 bp Feature: domain Description: IstB_IS21_ATP Location: 351511-351595 bp Feature: domain Description: IstB_IS2 1_ATP Location: 351511-351595 bp Feature: domain Description: IstB_IS21 Location: 351598-352126 bp Feature: domain Description: IstB_IS2 1 Location: 351598-352 12 6 bp Feature: gene Location: 352523-352663 bp Feature: gene Location: 352942-354267 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 353203-353818 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3532 03-353818 bp Feature: domain Description: GIIM Note: maturase Location: 353872-354100 bp Feature: domain Description: GIIM Note: maturase Location: 353872 -354100 bp Feature: gene Location: 354345-354662 bp Feature: domain Description: Arc Location: 354369-354516 bp Feature: domain Description: Arc Location: 354369-354516 bp Feature: gene Location: 355055-355879 bp Feature: domain Description: PRK09984 Location: 355058-355793 bp Feature: domain Description: PRK09984 Location: 355058-355793 bp Feature: gene Location: 962773-962901 bp Feature: gene Location: 962994-963338 bp Feature: domain Description: GIIM Note: maturase Location: 963000-963171 bp Feature: domain Description: GIIM Note: maturase Location: 963000-963171 bp Feature: gene Location: 963314-964318 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 963575-964190 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 963575-964190 bp Feature: gene Location: 964254-964733 bp Feature: gene Location: 965288-966037 bp Feature: domain Description: IstB_IS21_ATP Location: 965360-965438 bp Feature: domain Description: IstB_IS2 1_ATP Location: 965360-965438 bp Feature: domain Description: IstB_IS21 Location: 965450-965978 bp Feature: domain Description: IstB_IS2 1 Location: 965450-965978 bp Feature: gene Location: 1276939-1280568 bp Feature: domain Description: recB Location: 1276966-1280539 bp Feature: domain Description: recB Location: 12 76966-12 80539 bp Feature: gene Location: 1280565-1283978 bp Feature: domain Description: recC Location: 1280601-1283832 bp Feature: domain Description: recC Location: 12 80601-12 83832 bp Feature: gene Location: 1284178-1285455 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1284439-1285036 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 84439-12 85036 bp Feature: domain Description: GIIM Note: maturase Location: 1285093-1285303 bp Feature: domain Description: GIIM Note: maturase Location: 12 85093-12 85303 bp Feature: gene Location: 1285391-1285870 bp Feature: gene Location: 1286272-1287624 bp Feature: domain Description: Arm-DNA-bind_3 Location: 1286287-1286563 bp Feature: domain Description: Arm-DNA-bind_3 Location: 12 862 87-12 86563 bp Feature: domain Description: INT_P4_C Location: 1287004-1287595 bp Feature: domain Description: INT_P4_C Location: 12 87004-12 87595 bp Feature: gene Location: 1667821-1670388 bp Feature: domain Description: mutS1 Location: 1667842-1670380 bp Feature: domain Description: mutS1 Location: 1667842 -1670380 bp Feature: gene Location: 1670528-1670851 bp Feature: domain Description: PreA Location: 1670540-1670720 bp Feature: domain Description: PreA Location: 1670540-167072 0 bp Feature: domain Description: DUF3470 Location: 1670726-1670849 bp Feature: domain Description: DUF3470 Location: 167072 6-1670849 bp Feature: gene Location: 1672035-1673360 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1672296-1672911 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1672 2 96-1672 911 bp Feature: domain Description: GIIM Note: maturase Location: 1672965-1673193 bp Feature: domain Description: GIIM Note: maturase Location: 1672 965-1673193 bp Feature: gene Location: 1673296-1673775 bp Feature: gene Location: 1673932-1674939 bp Feature: domain Description: PRK05657 Location: 1674052-1674934 bp Feature: domain Description: PRK05657 Location: 1674052 -1674934 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK01712 (carbon storage regulator CsrA), RVT-GII, GIIM (pfam08388), DUF4124 (pfam13511), SmpA_OmlA (pfam04355), MgtE (pfam01769), IstB_IS21_ATP (pfam08483), IstB_IS21 (pfam01695), Arc (pfam03869), PRK09984 (phosphonate ABC transporter ATP-binding protein)
recB (TIGR00609), recC (TIGR01450), Arm-DNA-bind_3 (pfam13356), INT_P4_C (cd00801), mutS1 (TIGR01070), PreA (COG1146), DUF3470 (pfam11953), PRK05657 (RNA polymerase sigma factor RpoS; Validated)