myRT

myRT report for GCA_013410765.1_ASM1341076v1

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Seq: JACCGE010000001.1 Paraburkholderia bryophila strain M3D6B Ga0416735_01, whole genome shotgun sequence (4470194 bp)
Overview 1 RT 1: 4452845-4465511 bp Neighborhood of RT #1 [4452845, 4465511] TldD UvrA UvrA UvrA UvrA RVT_N RVT-GII Sigma70_r3 HTH_Hin_like HTH_23 HTH_23 HTH_23 Feature: gene Location: 4452845-4454281 bp Feature: domain Description: TldD Location: 4452884-4454273 bp Feature: domain Description: TldD Location: 4452884-4454273 bp Feature: gene Location: 4454440-4460325 bp Feature: domain Description: UvrA Location: 4454455-4457392 bp Feature: domain Description: UvrA Location: 4454455-4457392 bp Feature: domain Description: UvrA Location: 4457494-4458412 bp Feature: domain Description: UvrA Location: 4457494-445841 2 bp Feature: domain Description: UvrA Location: 4458469-4459309 bp Feature: domain Description: UvrA Location: 4458469-4459309 bp Feature: domain Description: UvrA Location: 4459393-4460275 bp Feature: domain Description: UvrA Location: 4459393-4460275 bp Feature: gene Location: 4461065-4461739 bp Feature: domain Description: RVT_N Location: 4461113-4461356 bp Feature: domain Description: RVT_N Location: 4461 1 1 3-4461 356 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4461401-4461584 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4461 401 -4461 584 bp Feature: gene Location: 4461761-4465246 bp Feature: domain Description: Sigma70_r3 Location: 4464068-4464131 bp Feature: domain Description: Sigma70_r3 Location: 4464068-44641 31 bp Feature: domain Description: HTH_Hin_like Location: 4464158-4464275 bp Feature: domain Description: HTH_Hin_like Location: 44641 58-4464275 bp Feature: domain Description: HTH_23 Location: 4464335-4464437 bp Feature: domain Description: HTH_23 Location: 4464335-4464437 bp Feature: domain Description: HTH_23 Location: 4464491-4464572 bp Feature: domain Description: HTH_23 Location: 4464491 -4464572 bp Feature: domain Description: HTH_23 Location: 4464650-4464743 bp Feature: domain Description: HTH_23 Location: 4464650-4464743 bp Feature: gene Location: 4465296-4465511 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TldD (COG0312), UvrA (COG0178), RVT_N (pfam13655), RVT-GII, Sigma70_r3 (pfam04539), HTH_Hin_like (cd00569), HTH_23 (pfam13384)

Seq: JACCGE010000002.1 Paraburkholderia bryophila strain M3D6B Ga0416735_02, whole genome shotgun sequence (3315264 bp)
Overview 1 RT 1: 2913918-2918045 bp Neighborhood of RT #1 [2913918, 2918101] PBP1_ABC_LIVBP_like RVT-GII GntR MR_like Feature: gene Location: 2913918-2914052 bp Feature: gene Location: 2914100-2915245 bp Feature: domain Description: PBP1_ABC_LIVBP_like Location: 2914205-2915213 bp Feature: domain Description: PBP1_ABC_LIVBP_like Location: 2 9142 05-2 9152 13 bp Feature: gene Location: 2915363-2915800 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2915372-2915579 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 915372 -2 915579 bp Feature: gene Location: 2916199-2916894 bp Feature: domain Description: GntR Location: 2916226-2916850 bp Feature: domain Description: GntR Location: 2 9162 2 6-2 916850 bp Feature: gene Location: 2916962-2918101 bp Feature: domain Description: MR_like Location: 2916968-2918045 bp Feature: domain Description: MR_like Location: 2 916968-2 918045 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PBP1_ABC_LIVBP_like, RVT-GII, GntR (pfam00392), MR_like (cd03316)

Seq: JACCGE010000003.1 Paraburkholderia bryophila strain M3D6B Ga0416735_03, whole genome shotgun sequence (110673 bp)
Overview 1 RT 1: 35051-40175 bp Neighborhood of RT #1 [35051, 40222] dnaE2 RVT-Retrons AAA_21 AAA_21 DUF3268 Feature: gene Location: 35051-36295 bp Feature: domain Description: dnaE2 Location: 35057-36293 bp Feature: domain Description: dnaE2 Location: 3 5057-3 6293 bp Feature: gene Location: 36342-36656 bp Feature: gene Location: 37165-38133 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 37291-37852 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 7291-3 7852 bp Feature: gene Location: 38130-39473 bp Feature: domain Description: AAA_21 Location: 38211-38361 bp Feature: domain Description: AAA_21 Location: 3 8211-3 83 61 bp Feature: domain Description: AAA_21 Location: 38703-38874 bp Feature: domain Description: AAA_21 Location: 3 8703 -3 8874 bp Feature: gene Location: 39764-40222 bp Feature: domain Description: DUF3268 Location: 39803-40175 bp Feature: domain Description: DUF3 268 Location: 3 9803 -40175 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dnaE2 (PRK05672), RVT-Retrons, AAA_21 (pfam13304), DUF3268 (pfam11672)