myRT

myRT report for GCA_013410855.1_ASM1341085v1

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Seq: JACBNL010000007.1 Clostridium saccharobutylicum strain DJ133 Ga0419086_07, whole genome shotgun sequence (227925 bp)
Overview 1 RT 1: 76753-85471 bp Neighborhood of RT #1 [76753, 85471] Sig70_famx3 DUF1835 DUF3658 RVT-Retrons Feature: gene Location: 76753-77280 bp Feature: domain Description: Sig70_famx3 Location: 76759-77242 bp Feature: domain Description: Sig70_famx3 Location: 76759-77242 bp Feature: gene Location: 77499-78524 bp Feature: domain Description: DUF1835 Location: 77514-77883 bp Feature: domain Description: DUF1 835 Location: 7751 4-77883 bp Feature: domain Description: DUF3658 Location: 77973-78285 bp Feature: domain Description: DUF3658 Location: 77973-78285 bp Feature: gene Location: 79112-80617 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 79748-80390 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 79748-80390 bp Feature: gene Location: 80614-82422 bp Feature: gene Location: 82424-85471 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Sig70_famx3 (TIGR02954), DUF1835 (pfam08874), DUF3658 (pfam12395), RVT-Retrons

Seq: JACBNL010000017.1 Clostridium saccharobutylicum strain DJ133 Ga0419086_17, whole genome shotgun sequence (81698 bp)
Overview 1 RT 1: 55764-58926 bp Neighborhood of RT #1 [55764, 58964] RVT-GII RVT-GII DDE_Tnp_1 Feature: gene Location: 55764-55898 bp Feature: gene Location: 56366-56773 bp Feature: gene Location: 57207-57845 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57543-57726 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57543-5772 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57729-57834 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5772 9-57834 bp Feature: gene Location: 58316-58666 bp Feature: gene Location: 58758-58964 bp Feature: domain Description: DDE_Tnp_1 Location: 58788-58926 bp Feature: domain Description: DDE_Tnp_1 Location: 58788-5892 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_1 (pfam01609)

Seq: JACBNL010000035.1 Clostridium saccharobutylicum strain DJ133 Ga0419086_35, whole genome shotgun sequence (46823 bp)
Overview 1 RT 1: 36251-43660 bp Neighborhood of RT #1 [36251, 44160] Enpp RVT-Retrons UvrD UvrD Feature: gene Location: 36251-36787 bp Feature: gene Location: 37358-38662 bp Feature: domain Description: Enpp Location: 37376-38612 bp Feature: domain Description: Enpp Location: 3 73 76-3 8612 bp Feature: gene Location: 38964-40088 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 39180-39738 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 9180-3 973 8 bp Feature: gene Location: 40300-41307 bp Feature: gene Location: 41593-44160 bp Feature: domain Description: UvrD Location: 42115-43243 bp Feature: domain Description: UvrD Location: 42115-43 243 bp Feature: domain Description: UvrD Location: 43420-43660 bp Feature: domain Description: UvrD Location: 43 420-43 660 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Enpp (cd16018), RVT-Retrons, UvrD (COG0210)

Seq: JACBNL010000038.1 Clostridium saccharobutylicum strain DJ133 Ga0419086_38, whole genome shotgun sequence (25686 bp)
Overview 1 RT 1: 42-7498 bp Neighborhood of RT #1 [42, 7704] PHA02517 RVT_N RVT-GII GIIM rve_2 PG_binding_1 lyz_endolysin_autolysin P-type_ATPase Feature: gene Location: 42-899 bp Feature: domain Description: PHA02517 Location: 330-879 bp Feature: domain Description: PHA02517 Location: 330-879 bp Feature: gene Location: 1425-2960 bp Feature: RT Description: RVT_N Location: 1497-1740 bp Feature: RT Description: RVT_N Location: 14 97-174 0 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1785-2445 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1785-24 4 5 bp Feature: domain Description: GIIM Note: maturase Location: 2496-2733 bp Feature: domain Description: GIIM Note: maturase Location: 24 96-2733 bp Feature: domain Description: rve_2 Location: 2877-2952 bp Feature: domain Description: rve_2 Location: 2877-2952 bp Feature: gene Location: 4383-4868 bp Feature: domain Description: PG_binding_1 Location: 4542-4668 bp Feature: domain Description: PG_binding_1 Location: 4 54 2-4 668 bp Feature: domain Description: lyz_endolysin_autolysin Location: 4728-4860 bp Feature: domain Description: lyz_endolysin_autolysin Location: 4 728-4 860 bp Feature: gene Location: 5317-7704 bp Feature: domain Description: P-type_ATPase Location: 5371-7498 bp Feature: domain Description: P-type_ATPase Location: 5371-74 98 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), rve_2 (pfam13333), PHA02517 (putative transposase OrfB; Reviewed), P-type_ATPase (cd07539)