myRT

myRT report for GCA_013411295.1_ASM1341129v1

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Seq: WRYD01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain UB85 NODE_1_length_337742_cov_80.453278, whole genome shotgun sequence (337742 bp)
Overview 1 RT 1: 166341-173194 bp Neighborhood of RT #1 [166341, 173196] 5 RVT-UG11 PRK10201 PRK05658 Feature: gene Location: 166341-166886 bp Feature: gene Location: 166889-168589 bp Feature: domain Description: 5 Location: 168113-168407 bp Feature: domain Description: 5 Location: 1 681 1 3-1 68407 bp Feature: gene Location: 169496-170260 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 169619-170072 bp Feature: RT Description: RVT-UG1 1 Note: UG1 1 RT Location: 1 6961 9-1 70072 bp Feature: gene Location: 170584-171090 bp Feature: domain Description: PRK10201 Location: 170587-171085 bp Feature: domain Description: PRK1 0201 Location: 1 70587-1 71 085 bp Feature: gene Location: 171214-173196 bp Feature: domain Description: PRK05658 Location: 171352-173194 bp Feature: domain Description: PRK05658 Location: 1 71 352-1 731 94 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT 5 (PHA02596), RVT-UG11, PRK10201 (G/U mismatch-specific DNA glycosylase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)

Seq: WRYD01000022.1 Salmonella enterica subsp. enterica serovar Typhimurium strain UB85 NODE_22_length_81304_cov_79.905500, whole genome shotgun sequence (81304 bp)
Overview 1 RT 1: 31797-36722 bp Neighborhood of RT #1 [31797, 36730] INT_P4_C RVT-Retrons PRK10473 Feature: gene Location: 31797-32519 bp Feature: domain Description: INT_P4_C Location: 31917-32448 bp Feature: domain Description: INT_P4_C Location: 31917-32 448 bp Feature: gene Location: 32844-33806 bp Feature: gene Location: 33806-34741 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 33917-34502 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 33917-34502 bp Feature: gene Location: 34989-35198 bp Feature: gene Location: 35543-36730 bp Feature: domain Description: PRK10473 Location: 35546-36722 bp Feature: domain Description: PRK10473 Location: 35546-3672 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_P4_C (cd00801), RVT-Retrons, PRK10473 (MdtL family multidrug efflux MFS transporter)