myRT

myRT report for GCA_013411675.1_ASM1341167v1

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Seq: WRYW01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain O178 NODE_1_length_253880_cov_73.820211, whole genome shotgun sequence (253880 bp)
Overview 1 RT 1: 107287-114140 bp 2 RT 2: 139739-145864 bp Neighborhood of RT #1 [107287, 114142] 5 RVT-UG11 PRK10201 PRK05658 Neighborhood of RT #2 [139739, 146046] PRK05658 PRK10201 RVT-UG11 5 Feature: gene Location: 107287-107832 bp Feature: gene Location: 107835-109535 bp Feature: domain Description: 5 Location: 109059-109353 bp Feature: domain Description: 5 Location: 1 09059-1 09353 bp Feature: gene Location: 110442-111206 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 110565-111018 bp Feature: RT Description: RVT-UG1 1 Note: UG1 1 RT Location: 1 1 0565-1 1 1 01 8 bp Feature: gene Location: 111530-112036 bp Feature: domain Description: PRK10201 Location: 111533-112031 bp Feature: domain Description: PRK1 0201 Location: 1 1 1 533-1 1 2031 bp Feature: gene Location: 112160-114142 bp Feature: domain Description: PRK05658 Location: 112298-114140 bp Feature: domain Description: PRK05658 Location: 1 1 2298-1 1 41 40 bp Feature: gene Location: 139739-141721 bp Feature: domain Description: PRK05658 Location: 139877-141719 bp Feature: domain Description: PRK05658 Location: 1 39877-1 41 71 9 bp Feature: gene Location: 141845-142351 bp Feature: domain Description: PRK10201 Location: 141848-142346 bp Feature: domain Description: PRK1 0201 Location: 1 41 848-1 42346 bp Feature: gene Location: 142675-142977 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 142678-142789 bp Feature: RT Description: RVT-UG1 1 Note: UG1 1 RT Location: 1 42678-1 42789 bp Feature: gene Location: 144049-144216 bp Feature: gene Location: 144346-146046 bp Feature: domain Description: 5 Location: 145570-145864 bp Feature: domain Description: 5 Location: 1 45570-1 45864 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT 5 (PHA02596), RVT-UG11, PRK10201 (G/U mismatch-specific DNA glycosylase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)

Seq: WRYW01000034.1 Salmonella enterica subsp. enterica serovar Typhimurium strain O178 NODE_34_length_47431_cov_122.600789, whole genome shotgun sequence (47431 bp)
Overview 1 RT 1: 10702-14878 bp Neighborhood of RT #1 [10702, 14878] PRK10473 RVT-Retrons Feature: gene Location: 10702-11889 bp Feature: domain Description: PRK10473 Location: 10705-11881 bp Feature: domain Description: PRK10473 Location: 10705-11881 bp Feature: gene Location: 12234-12443 bp Feature: gene Location: 12691-13626 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12802-13387 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12 802 -13387 bp Feature: gene Location: 13626-14588 bp Feature: gene Location: 14615-14878 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10473 (MdtL family multidrug efflux MFS transporter), RVT-Retrons