myRT

myRT report for GCA_013412755.1_ASM1341275v1

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Seq: JABUQW010000124.1 Escherichia coli strain EH3278 NODE_124_length_2272_cov_715.446_ID_11881, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 93-2269 bp Neighborhood of RT #1 [93, 2269] RVT-GII GIIM Feature: gene Location: 93-1616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1 098 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 73-1 371 bp Feature: gene Location: 1910-2269 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JABUQW010000044.1 Escherichia coli strain EH3278 NODE_44_length_40408_cov_240.12_ID_11721, whole genome shotgun sequence (40408 bp)
Overview 1 RT 1: 21376-24860 bp Neighborhood of RT #1 [21376, 24860] DUF1281 DUF1281_C RVT_N RVT-GII YkfC HNHc Feature: gene Location: 21376-21528 bp Feature: gene Location: 21598-22500 bp Feature: domain Description: DUF1281 Location: 21667-22195 bp Feature: domain Description: DUF12 81 Location: 2 1667-2 2 195 bp Feature: domain Description: DUF1281_C Location: 22201-22441 bp Feature: domain Description: DUF12 81_C Location: 2 2 2 01-2 2 441 bp Feature: gene Location: 22577-24301 bp Feature: RT Description: RVT_N Location: 22634-22871 bp Feature: RT Description: RVT_N Location: 2 2 634-2 2 871 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22922-23570 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 92 2 -2 3570 bp Feature: domain Description: YkfC Location: 23702-23858 bp Feature: domain Description: YkfC Location: 2 3702 -2 3858 bp Feature: domain Description: HNHc Note: nucleases Location: 24086-24245 bp Feature: domain Description: HNHc Note: nucleases Location: 2 4086-2 42 45 bp Feature: gene Location: 24342-24482 bp Feature: gene Location: 24564-24860 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1281 (pfam06924), DUF1281_C (pfam18406), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507)

Seq: JABUQW010000064.1 Escherichia coli strain EH3278 NODE_64_length_16581_cov_208.371_ID_11761, whole genome shotgun sequence (16581 bp)
Overview 1 RT 1: 8895-12784 bp Neighborhood of RT #1 [8895, 12789] RVT-GII RVT-GII GIIM LacI PBP1_GntR Feature: gene Location: 8895-9248 bp Feature: gene Location: 9607-9804 bp Feature: gene Location: 9973-10407 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10165-10381 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10165-103 81 bp Feature: gene Location: 10380-11231 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10383-10791 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 103 83 -10791 bp Feature: domain Description: GIIM Note: maturase Location: 10839-11064 bp Feature: domain Description: GIIM Note: maturase Location: 1083 9-11064 bp Feature: gene Location: 11409-11627 bp Feature: gene Location: 11758-12789 bp Feature: domain Description: LacI Location: 11800-11935 bp Feature: domain Description: LacI Location: 11800-1193 5 bp Feature: domain Description: PBP1_GntR Location: 11974-12784 bp Feature: domain Description: PBP1_GntR Location: 11974-12784 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), LacI (pfam00356), PBP1_GntR (cd01575)

Seq: JABUQW010000009.1 Escherichia coli strain EH3278 NODE_9_length_144244_cov_201.453_ID_11651, whole genome shotgun sequence (144244 bp)
Overview 1 RT 1: 1454-5559 bp Neighborhood of RT #1 [1454, 5559] DUF932 RVT-GII Intron_maturas2 HNHc DUF932 Feature: gene Location: 1454-1864 bp Feature: gene Location: 2084-2485 bp Feature: domain Description: DUF932 Location: 2195-2477 bp Feature: domain Description: DUF932 Location: 2195-24 77 bp Feature: gene Location: 2977-4755 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3238-4033 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3238-4 033 bp Feature: domain Description: Intron_maturas2 Location: 4159-4384 bp Feature: domain Description: Intron_maturas2 Location: 4 159-4 384 bp Feature: domain Description: HNHc Note: nucleases Location: 4579-4729 bp Feature: domain Description: HNHc Note: nucleases Location: 4 579-4 729 bp Feature: gene Location: 4928-5314 bp Feature: domain Description: DUF932 Location: 4934-5279 bp Feature: domain Description: DUF932 Location: 4 934 -5279 bp Feature: gene Location: 5314-5559 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF932 (pfam06067), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)