myRT

myRT report for GCA_013412765.1_ASM1341276v1

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Seq: JABUQV010000124.1 Escherichia coli strain EH3257 NODE_124_length_2272_cov_508.763_ID_11740, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 93-2269 bp Neighborhood of RT #1 [93, 2269] RVT-GII GIIM Feature: gene Location: 93-1616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1 098 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 73-1 371 bp Feature: gene Location: 1910-2269 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JABUQV010000003.1 Escherichia coli strain EH3257 NODE_3_length_246526_cov_126.852_ID_11498, whole genome shotgun sequence (246526 bp)
Overview 1 RT 1: 204918-209017 bp Neighborhood of RT #1 [204918, 209017] DUF932 RVT-GII Intron_maturas2 HNHc DUF932 Feature: gene Location: 204918-205118 bp Feature: gene Location: 205157-205543 bp Feature: domain Description: DUF932 Location: 205163-205508 bp Feature: domain Description: DUF932 Location: 2 05163-2 05508 bp Feature: gene Location: 205716-207494 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 205977-206772 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 05977-2 06772 bp Feature: domain Description: Intron_maturas2 Location: 206898-207123 bp Feature: domain Description: Intron_maturas2 Location: 2 06898-2 0712 3 bp Feature: domain Description: HNHc Note: nucleases Location: 207318-207468 bp Feature: domain Description: HNHc Note: nucleases Location: 2 07318-2 07468 bp Feature: gene Location: 207986-208387 bp Feature: domain Description: DUF932 Location: 208097-208379 bp Feature: domain Description: DUF932 Location: 2 08097-2 08379 bp Feature: gene Location: 208607-209017 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF932 (pfam06067), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JABUQV010000042.1 Escherichia coli strain EH3257 NODE_42_length_40278_cov_175.583_ID_11576, whole genome shotgun sequence (40278 bp)
Overview 1 RT 1: 21376-24860 bp Neighborhood of RT #1 [21376, 24860] DUF1281 DUF1281_C RVT_N RVT-GII YkfC HNHc Feature: gene Location: 21376-21528 bp Feature: gene Location: 21598-22500 bp Feature: domain Description: DUF1281 Location: 21667-22195 bp Feature: domain Description: DUF1281 Location: 21667-22195 bp Feature: domain Description: DUF1281_C Location: 22201-22441 bp Feature: domain Description: DUF1281_C Location: 22201-22441 bp Feature: gene Location: 22577-24301 bp Feature: RT Description: RVT_N Location: 22634-22871 bp Feature: RT Description: RVT_N Location: 2263 4-22871 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22922-23570 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22922-23 570 bp Feature: domain Description: YkfC Location: 23702-23858 bp Feature: domain Description: YkfC Location: 23 702-23 858 bp Feature: domain Description: HNHc Note: nucleases Location: 24086-24245 bp Feature: domain Description: HNHc Note: nucleases Location: 24086-24245 bp Feature: gene Location: 24342-24482 bp Feature: gene Location: 24564-24860 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1281 (pfam06924), DUF1281_C (pfam18406), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507)

Seq: JABUQV010000062.1 Escherichia coli strain EH3257 NODE_62_length_16581_cov_147.336_ID_11616, whole genome shotgun sequence (16581 bp)
Overview 1 RT 1: 8895-12784 bp Neighborhood of RT #1 [8895, 12789] RVT-GII RVT-GII GIIM LacI PBP1_GntR Feature: gene Location: 8895-9248 bp Feature: gene Location: 9607-9804 bp Feature: gene Location: 9973-10407 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10165-10381 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10165-10381 bp Feature: gene Location: 10380-11231 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10383-10791 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10383-10791 bp Feature: domain Description: GIIM Note: maturase Location: 10839-11064 bp Feature: domain Description: GIIM Note: maturase Location: 10839-11064 bp Feature: gene Location: 11409-11627 bp Feature: gene Location: 11758-12789 bp Feature: domain Description: LacI Location: 11800-11935 bp Feature: domain Description: LacI Location: 11800-11935 bp Feature: domain Description: PBP1_GntR Location: 11974-12784 bp Feature: domain Description: PBP1_GntR Location: 11974 -12784 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), LacI (pfam00356), PBP1_GntR (cd01575)