myRT

myRT report for GCA_013412815.1_ASM1341281v1

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Seq: JABUQU010000142.1 Escherichia coli strain EH3212 NODE_142_length_932_cov_306.977640, whole genome shotgun sequence (932 bp)
Overview 1 RT 1: 1-850 bp Neighborhood of RT #1 [1, 930] RVT-GII GIIM Feature: gene Location: 1-930 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43-577 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43-577 bp Feature: domain Description: GIIM Note: maturase Location: 652-850 bp Feature: domain Description: GIIM Note: maturase Location: 652-850 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JABUQU010000176.1 Escherichia coli strain EH3212 NODE_176_length_654_cov_209.402277, whole genome shotgun sequence (654 bp)
Overview 1 RT 1: 2-551 bp Neighborhood of RT #1 [2, 556] RVT-GII Feature: gene Location: 2-556 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 275-551 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 75-551 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JABUQU010000377.1 Escherichia coli strain EH3212 NODE_377_length_255_cov_126.117188, whole genome shotgun sequence (255 bp)
Overview 1 RT 1: 2-248 bp Neighborhood of RT #1 [2, 253] RVT-GII Feature: gene Location: 2-253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-248 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-248 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JABUQU010000037.1 Escherichia coli strain EH3212 NODE_37_length_53020_cov_87.204658, whole genome shotgun sequence (53020 bp)
Overview 1 RT 1: 45890-49779 bp Neighborhood of RT #1 [45890, 49784] RVT-GII RVT-GII GIIM LacI PBP1_GntR Feature: gene Location: 45890-46243 bp Feature: gene Location: 46602-46799 bp Feature: gene Location: 46968-47402 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47160-47376 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 7160-4 7376 bp Feature: gene Location: 47375-48226 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47378-47786 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 7378-4 7786 bp Feature: domain Description: GIIM Note: maturase Location: 47834-48059 bp Feature: domain Description: GIIM Note: maturase Location: 4 7834 -4 8059 bp Feature: gene Location: 48404-48622 bp Feature: gene Location: 48753-49784 bp Feature: domain Description: LacI Location: 48795-48930 bp Feature: domain Description: LacI Location: 4 8795-4 8930 bp Feature: domain Description: PBP1_GntR Location: 48969-49779 bp Feature: domain Description: PBP1_GntR Location: 4 8969-4 9779 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), LacI (pfam00356), PBP1_GntR (cd01575)

Seq: JABUQU010000038.1 Escherichia coli strain EH3212 NODE_38_length_52096_cov_109.168985, whole genome shotgun sequence (52096 bp)
Overview 1 RT 1: 26955-30747 bp Neighborhood of RT #1 [26955, 30747] RVT_N RVT-GII YkfC HNHc DUF1281 DUF1281_C Feature: gene Location: 26955-27224 bp Feature: gene Location: 27705-27845 bp Feature: gene Location: 27867-29591 bp Feature: RT Description: RVT_N Location: 27924-28161 bp Feature: RT Description: RVT_N Location: 27924-28161 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28212-28860 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28212-28860 bp Feature: domain Description: YkfC Location: 28992-29148 bp Feature: domain Description: YkfC Location: 28992-29148 bp Feature: domain Description: HNHc Note: nucleases Location: 29376-29535 bp Feature: domain Description: HNHc Note: nucleases Location: 29376-295 35 bp Feature: gene Location: 29668-30570 bp Feature: domain Description: DUF1281 Location: 29737-30265 bp Feature: domain Description: DUF1281 Location: 29737-30265 bp Feature: domain Description: DUF1281_C Location: 30271-30511 bp Feature: domain Description: DUF1281_C Location: 30271-305 11 bp Feature: gene Location: 30574-30747 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), DUF1281 (pfam06924), DUF1281_C (pfam18406)

Seq: JABUQU010000005.1 Escherichia coli strain EH3212 NODE_5_length_180556_cov_90.796380, whole genome shotgun sequence (180556 bp)
Overview 1 RT 1: 138947-143046 bp Neighborhood of RT #1 [138947, 143046] DUF932 RVT-GII Intron_maturas2 HNHc DUF932 Feature: gene Location: 138947-139147 bp Feature: gene Location: 139186-139572 bp Feature: domain Description: DUF932 Location: 139192-139537 bp Feature: domain Description: DUF932 Location: 139192-139537 bp Feature: gene Location: 139745-141523 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 140006-140801 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 140006 -140801 bp Feature: domain Description: Intron_maturas2 Location: 140927-141152 bp Feature: domain Description: Intron_maturas2 Location: 140927-141152 bp Feature: domain Description: HNHc Note: nucleases Location: 141347-141497 bp Feature: domain Description: HNHc Note: nucleases Location: 141347-141497 bp Feature: gene Location: 142015-142416 bp Feature: domain Description: DUF932 Location: 142126-142408 bp Feature: domain Description: DUF932 Location: 142126 -142408 bp Feature: gene Location: 142636-143046 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF932 (pfam06067), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)