myRT

myRT report for GCA_013413605.1_ASM1341360v1

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Seq: JACBWP010000024.1 Escherichia coli strain E7V3P1C1 Contig_24_consensus_sequence, whole genome shotgun sequence (81334 bp)
Overview 1 RT 1: 17368-20741 bp Neighborhood of RT #1 [17368, 20741] HigB-like_toxin RVT-GII PinE Feature: gene Location: 17368-17664 bp Feature: domain Description: HigB-like_toxin Location: 17392-17662 bp Feature: domain Description: HigB-like_toxin Location: 1 7392-1 7662 bp Feature: gene Location: 17585-18034 bp Feature: gene Location: 18146-19057 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18350-18944 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 8350-1 8944 bp Feature: gene Location: 19892-20470 bp Feature: domain Description: PinE Location: 19910-20462 bp Feature: domain Description: PinE Location: 1 991 0-20462 bp Feature: gene Location: 20532-20741 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HigB-like_toxin (pfam05015), RVT-GII, PinE (COG1961)

Seq: JACBWP010000037.1 Escherichia coli strain E7V3P1C1 Contig_37_consensus_sequence, whole genome shotgun sequence (55290 bp)
Overview 1 RT 1: 47224-50886 bp Neighborhood of RT #1 [47224, 50886] TnpB_IS66 HTH_23 InsE RVT-GII Intron_maturas2 HNHc DUF932 Feature: gene Location: 47224-47571 bp Feature: domain Description: TnpB_IS66 Location: 47251-47542 bp Feature: domain Description: TnpB_IS66 Location: 472 51-47542 bp Feature: gene Location: 47571-48218 bp Feature: domain Description: HTH_23 Location: 47601-47712 bp Feature: domain Description: HTH_2 3 Location: 47601-47712 bp Feature: domain Description: InsE Location: 47844-48198 bp Feature: domain Description: InsE Location: 47844-48198 bp Feature: gene Location: 48304-50082 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48565-49360 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48565-49360 bp Feature: domain Description: Intron_maturas2 Location: 49486-49711 bp Feature: domain Description: Intron_maturas2 Location: 49486-49711 bp Feature: domain Description: HNHc Note: nucleases Location: 49906-50056 bp Feature: domain Description: HNHc Note: nucleases Location: 49906-50056 bp Feature: gene Location: 50255-50641 bp Feature: domain Description: DUF932 Location: 50261-50606 bp Feature: domain Description: DUF932 Location: 502 61-50606 bp Feature: gene Location: 50641-50886 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), HTH_23 (pfam13384), InsE (COG2963), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF932 (pfam06067)