myRT

myRT report for GCA_013413695.1_ASM1341369v1

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Seq: JACBWF010000032.1 Escherichia coli strain E7N16P4C9 Contig_32_consensus_sequence, whole genome shotgun sequence (54950 bp)
Overview 1 RT 1: 53684-54917 bp Neighborhood of RT #1 [53684, 54949] RVT_N RVT-GII HTH_Tnp_1 Feature: gene Location: 53684-53941 bp Feature: gene Location: 53998-54132 bp Feature: gene Location: 54157-54633 bp Feature: RT Description: RVT_N Location: 54211-54454 bp Feature: RT Description: RVT_N Location: 5421 1 -54454 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54499-54631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54499-54631 bp Feature: gene Location: 54695-54949 bp Feature: domain Description: HTH_Tnp_1 Location: 54704-54917 bp Feature: domain Description: HTH_Tnp_1 Location: 54704-5491 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, HTH_Tnp_1 (pfam01527)

Seq: JACBWF010000041.1 Escherichia coli strain E7N16P4C9 Contig_41_consensus_sequence, whole genome shotgun sequence (12924 bp)
Overview 1 RT 1: 3-2969 bp Neighborhood of RT #1 [3, 3028] PHA02517 RVT-GII GIIM HNHc DUF1281 DUF1281_C Feature: gene Location: 3-290 bp Feature: domain Description: PHA02517 Location: 6-279 bp Feature: domain Description: PHA02 517 Location: 6-2 79 bp Feature: gene Location: 382-1563 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 394-841 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 394-841 bp Feature: domain Description: GIIM Note: maturase Location: 892-1126 bp Feature: domain Description: GIIM Note: maturase Location: 892 -112 6 bp Feature: domain Description: HNHc Note: nucleases Location: 1357-1507 bp Feature: domain Description: HNHc Note: nucleases Location: 1357-1507 bp Feature: gene Location: 1793-2098 bp Feature: gene Location: 2102-3028 bp Feature: domain Description: DUF1281 Location: 2195-2723 bp Feature: domain Description: DUF12 81 Location: 2 195-2 72 3 bp Feature: domain Description: DUF1281_C Location: 2729-2969 bp Feature: domain Description: DUF12 81_C Location: 2 72 9-2 969 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1281 (pfam06924), DUF1281_C (pfam18406), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), HNHc (smart00507)