myRT

myRT report for GCA_013414205.1_ASM1341420v1

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Seq: JAATTW010000101.1 Pseudoalteromonas sp. MIP2626 NODE_101_length_1981_cov_311.639, whole genome shotgun sequence (1981 bp)
Overview 1 RT 1: 72-1236 bp Neighborhood of RT #1 [72, 1427] RVT-GII GIIM Feature: gene Location: 72-1427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-990 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-990 bp Feature: domain Description: GIIM Note: maturase Location: 1029-1236 bp Feature: domain Description: GIIM Note: maturase Location: 1 029-1 236 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JAATTW010000118.1 Pseudoalteromonas sp. MIP2626 NODE_118_length_1212_cov_1568.03, whole genome shotgun sequence (1212 bp)
Overview 1 RT 1: 674-1211 bp Neighborhood of RT #1 [674, 1210] RVT-GII Feature: gene Location: 674-1210 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 887-1211 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 887-12 11 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JAATTW010000125.1 Pseudoalteromonas sp. MIP2626 NODE_125_length_786_cov_315.192, whole genome shotgun sequence (786 bp)
Overview 1 RT 1: 40-613 bp Neighborhood of RT #1 [40, 783] RVT-GII GIIM Feature: gene Location: 40-783 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43-343 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43 -3 43 bp Feature: domain Description: GIIM Note: maturase Location: 394-613 bp Feature: domain Description: GIIM Note: maturase Location: 3 94-613 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JAATTW010000014.1 Pseudoalteromonas sp. MIP2626 NODE_14_length_71212_cov_164.398, whole genome shotgun sequence (71212 bp)
Overview 1 RT 1: 68267-71033 bp Neighborhood of RT #1 [68267, 71209] YgaA DUF3754 RVT-GII GIIM Feature: gene Location: 68267-68851 bp Feature: domain Description: YgaA Location: 68291-68756 bp Feature: domain Description: YgaA Location: 68291-68756 bp Feature: gene Location: 69031-70281 bp Feature: domain Description: DUF3754 Location: 69508-69967 bp Feature: domain Description: DUF3754 Location: 69508-69967 bp Feature: gene Location: 70400-71209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70406-70769 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 704 06-70769 bp Feature: domain Description: GIIM Note: maturase Location: 70814-71033 bp Feature: domain Description: GIIM Note: maturase Location: 70814 -71033 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YgaA (COG1238), DUF3754 (pfam12576), RVT-GII, GIIM (pfam08388)

Seq: JAATTW010000036.1 Pseudoalteromonas sp. MIP2626 NODE_36_length_35799_cov_359.215, whole genome shotgun sequence (35799 bp)
Overview 1 RT 1: 33602-35626 bp Neighborhood of RT #1 [33602, 35796] PHA02517 group_II_RT_mat RVT-GII DDE_Tnp_IS66 Feature: gene Location: 33602-34042 bp Feature: domain Description: PHA02517 Location: 33605-34016 bp Feature: domain Description: PHA025 17 Location: 33605 -34016 bp Feature: gene Location: 34192-34731 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 34198-34510 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 34198-345 10 bp Feature: gene Location: 34704-35495 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34977-35397 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34977-35 397 bp Feature: gene Location: 35542-35796 bp Feature: domain Description: DDE_Tnp_IS66 Location: 35545-35626 bp Feature: domain Description: DDE_Tnp_IS66 Location: 35 5 45 -35 626 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), group_II_RT_mat (TIGR04416), RVT-GII, DDE_Tnp_IS66 (pfam03050)

Seq: JAATTW010000047.1 Pseudoalteromonas sp. MIP2626 NODE_47_length_25768_cov_146.854, whole genome shotgun sequence (25768 bp)
Overview 1 RT 1: 91-5035 bp Neighborhood of RT #1 [91, 5097] recD_rel RVT_N RVT-GII GIIM COG5628 Feature: gene Location: 91-2169 bp Feature: domain Description: recD_rel Location: 289-2158 bp Feature: domain Description: recD_rel Location: 289-2158 bp Feature: gene Location: 2301-3773 bp Feature: domain Description: RVT_N Location: 2349-2592 bp Feature: domain Description: RVT_N Location: 2349-2592 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2637-3264 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26 37-326 4 bp Feature: domain Description: GIIM Note: maturase Location: 3324-3549 bp Feature: domain Description: GIIM Note: maturase Location: 3324-3549 bp Feature: gene Location: 3751-3918 bp Feature: gene Location: 4603-5097 bp Feature: domain Description: COG5628 Location: 4768-5035 bp Feature: domain Description: COG56 28 Location: 476 8-5035 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT recD_rel (TIGR01448), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), COG5628 (Predicted acetyltransferase )

Seq: JAATTW010000052.1 Pseudoalteromonas sp. MIP2626 NODE_52_length_23297_cov_168.949, whole genome shotgun sequence (23297 bp)
Overview 1 RT 1: 3-1398 bp Neighborhood of RT #1 [3, 1398] RVT-GII Feature: gene Location: 3-605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 216-606 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 216-606 bp Feature: gene Location: 664-816 bp Feature: gene Location: 1159-1398 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JAATTW010000088.1 Pseudoalteromonas sp. MIP2626 NODE_88_length_3605_cov_204.197, whole genome shotgun sequence (3605 bp)
Overview 1 RT 1: 1130-3602 bp Neighborhood of RT #1 [1130, 3602] PRK10702 RVT-Retrons Feature: gene Location: 1130-1312 bp Feature: domain Description: PRK10702 Location: 1136-1307 bp Feature: domain Description: PRK10702 Location: 1136-1307 bp Feature: gene Location: 1444-1605 bp Feature: gene Location: 1691-3412 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1847-2468 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 18 47-2468 bp Feature: gene Location: 3462-3602 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10702 (endonuclease III; Provisional), RVT-Retrons