myRT

myRT report for GCA_013415495.1_ASM1341549v1

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Seq: JAARNO010000001.1 Klebsiella pneumoniae strain BA32040, whole genome shotgun sequence (5298155 bp)
Overview 1 RT 1: 536707-540560 bp 2 RT 2: 3424487-3431355 bp 3 RT 3: 3947148-3950656 bp 4 RT 4: 4456480-4462951 bp 5 RT 5: 4653329-4657410 bp Neighborhood of RT #1 [536707, 540560] umuC PRK10276 RVT-GII Neighborhood of RT #2 [3424487, 3431357] FimC FimD RVT-UG4 Integrase_1 INT_P4_C Neighborhood of RT #3 [3947148, 3950853] DUF551 RVT-GII PRK10276 Neighborhood of RT #4 [4456480, 4462965] SbcB dacD RVT-GII PRK10016 YccC Neighborhood of RT #5 [4653329, 4657604] IS5 RVT-GII PRK10276 Feature: gene Location: 536707-537972 bp Feature: domain Description: umuC Location: 536710-537970 bp Feature: domain Description: umuC Location: 53671 0-537970 bp Feature: gene Location: 537975-538394 bp Feature: domain Description: PRK10276 Location: 537978-538389 bp Feature: domain Description: PRK1 0276 Location: 537978-538389 bp Feature: gene Location: 538473-539957 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 538875-539565 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 538875-539565 bp Feature: gene Location: 539966-540133 bp Feature: gene Location: 540414-540560 bp Feature: gene Location: 3424487-3425215 bp Feature: domain Description: FimC Location: 3424535-3425198 bp Feature: domain Description: FimC Location: 3424535-34251 98 bp Feature: gene Location: 3425247-3427856 bp Feature: domain Description: FimD Location: 3425304-3427845 bp Feature: domain Description: FimD Location: 3425304-3427845 bp Feature: gene Location: 3427856-3429934 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 3428264-3428708 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 3428264-3428708 bp Feature: gene Location: 3429991-3430431 bp Feature: domain Description: Integrase_1 Location: 3429997-3430213 bp Feature: domain Description: Integrase_1 Location: 3429997-343021 3 bp Feature: gene Location: 3430692-3431357 bp Feature: domain Description: INT_P4_C Location: 3430797-3431355 bp Feature: domain Description: INT_P4_C Location: 3430797-3431 355 bp Feature: gene Location: 3947148-3947624 bp Feature: domain Description: DUF551 Location: 3947409-3947607 bp Feature: domain Description: DUF551 Location: 3947409-3947607 bp Feature: gene Location: 3947783-3948010 bp Feature: gene Location: 3948730-3950217 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3949135-3949825 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39491 35-3949825 bp Feature: gene Location: 3950292-3950531 bp Feature: gene Location: 3950488-3950853 bp Feature: domain Description: PRK10276 Location: 3950533-3950656 bp Feature: domain Description: PRK1 0276 Location: 3950533-3950656 bp Feature: gene Location: 4456480-4457904 bp Feature: domain Description: SbcB Location: 4456486-4457902 bp Feature: domain Description: SbcB Location: 4456486-4457902 bp Feature: gene Location: 4458079-4459248 bp Feature: domain Description: dacD Location: 4458088-4459243 bp Feature: domain Description: dacD Location: 4458088-4459243 bp Feature: gene Location: 4459766-4461253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4460171-4460861 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44601 71 -4460861 bp Feature: gene Location: 4461335-4461808 bp Feature: domain Description: PRK10016 Location: 4461338-4461797 bp Feature: domain Description: PRK1 001 6 Location: 4461 338-4461 797 bp Feature: gene Location: 4461892-4462965 bp Feature: domain Description: YccC Location: 4461913-4462951 bp Feature: domain Description: YccC Location: 4461 91 3-4462951 bp Feature: gene Location: 4653329-4654309 bp Feature: domain Description: IS5 Location: 4653518-4654295 bp Feature: domain Description: IS5 Location: 465351 8-4654295 bp Feature: gene Location: 4654865-4655080 bp Feature: gene Location: 4655483-4656970 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4655888-4656578 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4655888-4656578 bp Feature: gene Location: 4657048-4657287 bp Feature: gene Location: 4657287-4657604 bp Feature: domain Description: PRK10276 Location: 4657293-4657410 bp Feature: domain Description: PRK1 0276 Location: 4657293-465741 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, FimC (COG3121), FimD (COG3188), RVT-UG4, Integrase_1 (pfam12835), INT_P4_C (cd00801), DUF551 (pfam04448), SbcB (COG2925)
dacD (PRK11397), PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289), IS5 (COG3039)

Seq: JAARNO010000002.1 Klebsiella pneumoniae strain BA32040, whole genome shotgun sequence (272049 bp)
Overview 1 RT 1: 131975-135815 bp Neighborhood of RT #1 [131975, 135835] INT_Cre_C RVT-GII HHA Feature: gene Location: 131975-132292 bp Feature: gene Location: 132358-133494 bp Feature: domain Description: INT_Cre_C Location: 132781-133435 bp Feature: domain Description: INT_Cre_C Location: 132 781-133435 bp Feature: gene Location: 133580-135067 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 133985-134675 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 133985-134675 bp Feature: gene Location: 135092-135562 bp Feature: gene Location: 135584-135835 bp Feature: domain Description: HHA Location: 135632-135815 bp Feature: domain Description: HHA Location: 135632 -135815 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_Cre_C (cd00799), RVT-GII, HHA (pfam05321)

Seq: JAARNO010000003.1 Klebsiella pneumoniae strain BA32040, whole genome shotgun sequence (106734 bp)
Overview 1 RT 1: 87474-92185 bp 2 RT 2: 96404-99652 bp Neighborhood of RT #1 [87474, 92313] DUF905 PRK09010 RVT-GII Intron_maturas2 HNHc AdoMet_MTases Neighborhood of RT #2 [96404, 99666] RVT-GII PRK10276 Feature: gene Location: 87474-87764 bp Feature: domain Description: DUF905 Location: 87546-87756 bp Feature: domain Description: DUF905 Location: 87546-87756 bp Feature: gene Location: 87771-88253 bp Feature: domain Description: PRK09010 Location: 87774-88251 bp Feature: domain Description: PRK09010 Location: 87774-88251 bp Feature: gene Location: 88421-90322 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88688-89519 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88688-89519 bp Feature: domain Description: Intron_maturas2 Location: 89633-89891 bp Feature: domain Description: Intron_maturas2 Location: 8963 3 -89891 bp Feature: domain Description: HNHc Note: nucleases Location: 90065-90227 bp Feature: domain Description: HNHc Note: nucleases Location: 90065-90227 bp Feature: gene Location: 91099-91416 bp Feature: gene Location: 91750-92313 bp Feature: domain Description: AdoMet_MTases Location: 91909-92185 bp Feature: domain Description: AdoMet_MTases Location: 91909-92185 bp Feature: gene Location: 96404-96625 bp Feature: gene Location: 96887-97117 bp Feature: gene Location: 97351-98838 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 97756-98446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 97756-98446 bp Feature: gene Location: 98844-99011 bp Feature: gene Location: 99241-99666 bp Feature: domain Description: PRK10276 Location: 99244-99652 bp Feature: domain Description: PRK10276 Location: 99244-99652 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK09010 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), AdoMet_MTases (cl17173), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)

Seq: JAARNO010000004.1 Klebsiella pneumoniae strain BA32040, whole genome shotgun sequence (86791 bp)
Overview 1 RT 1: 31104-35016 bp 2 RT 2: 38503-42143 bp Neighborhood of RT #1 [31104, 35016] Antirestrict DUF1380 RVT_N RVT-GII GIIM HNHc Neighborhood of RT #2 [38503, 42148] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 31104-31529 bp Feature: domain Description: Antirestrict Location: 31239-31527 bp Feature: domain Description: Antirestrict Location: 31239-31527 bp Feature: gene Location: 31576-31998 bp Feature: domain Description: DUF1380 Location: 31579-31876 bp Feature: domain Description: DUF1380 Location: 31579-31876 bp Feature: gene Location: 32500-34167 bp Feature: domain Description: RVT_N Location: 32548-32785 bp Feature: domain Description: RVT_N Location: 3254 8-32785 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32836-33478 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32836-334 78 bp Feature: domain Description: GIIM Note: maturase Location: 33529-33763 bp Feature: domain Description: GIIM Note: maturase Location: 33529-33763 bp Feature: domain Description: HNHc Note: nucleases Location: 33973-34132 bp Feature: domain Description: HNHc Note: nucleases Location: 33973-34 132 bp Feature: gene Location: 34447-34629 bp Feature: gene Location: 34741-35016 bp Feature: gene Location: 38503-38643 bp Feature: gene Location: 38977-39186 bp Feature: gene Location: 39321-41222 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39588-40419 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39588-4 04 19 bp Feature: domain Description: Intron_maturas2 Location: 40533-40791 bp Feature: domain Description: Intron_maturas2 Location: 4 0533-4 0791 bp Feature: domain Description: HNHc Note: nucleases Location: 40965-41127 bp Feature: domain Description: HNHc Note: nucleases Location: 4 0965-4 1127 bp Feature: gene Location: 41417-41857 bp Feature: domain Description: PRK13732 Location: 41423-41855 bp Feature: domain Description: PRK13732 Location: 4 14 23-4 1855 bp Feature: gene Location: 41915-42148 bp Feature: domain Description: DUF905 Location: 41945-42143 bp Feature: domain Description: DUF905 Location: 4 194 5-4 214 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Antirestrict (pfam03230), DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), Intron_maturas2 (pfam01348), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)