myRT

myRT report for GCA_013416395.1_ASM1341639v1

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Seq: JACCEP010000015.1 Alcaligenaceae bacterium strain CGII-56 NODE_15_length_99066_cov_57.668018, whole genome shotgun sequence (99066 bp)
Overview 1 RT 1: 97436-99066 bp Neighborhood of RT #1 [97436, 99065] RVT-GII COG3547 Feature: gene Location: 97436-97672 bp Feature: gene Location: 97686-97844 bp Feature: gene Location: 98025-98846 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 98286-98844 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 98286-98844 bp Feature: gene Location: 98934-99065 bp Feature: domain Description: COG3547 Location: 98946-99066 bp Feature: domain Description: COG3547 Location: 98946-99066 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, COG3547 (Transposase )

Seq: JACCEP010000026.1 Alcaligenaceae bacterium strain CGII-56 NODE_26_length_11853_cov_62.775200, whole genome shotgun sequence (11853 bp)
Overview 1 RT 1: 7150-11729 bp Neighborhood of RT #1 [7150, 11729] rve_2 RVT-GII DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII GIIM Feature: gene Location: 7150-7347 bp Feature: domain Description: rve_2 Location: 7156-7315 bp Feature: domain Description: rve_2 Location: 7156-7315 bp Feature: gene Location: 7389-7556 bp Feature: gene Location: 7689-9083 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8190-8880 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8190-8880 bp Feature: gene Location: 9112-10122 bp Feature: domain Description: DDE_Tnp_IS66 Location: 9169-9967 bp Feature: domain Description: DDE_Tnp_IS66 Location: 9169-9967 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 9988-10099 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 9988-10099 bp Feature: gene Location: 10130-11377 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10334-10991 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10334-10991 bp Feature: domain Description: GIIM Note: maturase Location: 11072-11297 bp Feature: domain Description: GIIM Note: maturase Location: 11072 -112 97 bp Feature: gene Location: 11370-11729 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), rve_2 (pfam13333), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817)

Seq: JACCEP010000002.1 Alcaligenaceae bacterium strain CGII-56 NODE_2_length_799344_cov_61.566143, whole genome shotgun sequence (799344 bp)
Overview 1 RT 1: 407942-410559 bp Neighborhood of RT #1 [407942, 410582] RVT-DGRs Avd_like DUF1566 Feature: gene Location: 407942-408136 bp Feature: gene Location: 408101-408340 bp Feature: gene Location: 408363-409487 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 408555-409233 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 408555-40923 3 bp Feature: gene Location: 409746-410132 bp Feature: domain Description: Avd_like Location: 409773-410079 bp Feature: domain Description: Avd_like Location: 409773 -410079 bp Feature: gene Location: 410163-410582 bp Feature: domain Description: DUF1566 Location: 410310-410559 bp Feature: domain Description: DUF1566 Location: 4103 10-410559 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)