myRT

myRT report for GCA_013416445.1_ASM1341644v1

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Seq: JACCER010000011.1 Alcaligenaceae bacterium strain CGII-64 NODE_11_length_149227_cov_91.488249, whole genome shotgun sequence (149227 bp)
Overview 1 RT 1: 1641-4964 bp Neighborhood of RT #1 [1641, 4999] PHA02517 PHA02517 PHA02517 YkfC RVT-GII Phage_int_SAM_1 INT_RitC_C_like PRK06526 Feature: gene Location: 1641-2081 bp Feature: domain Description: PHA02517 Location: 1644-1788 bp Feature: domain Description: PHA0251 7 Location: 1 644-1 788 bp Feature: domain Description: PHA02517 Location: 1893-2031 bp Feature: domain Description: PHA0251 7 Location: 1 893-2031 bp Feature: gene Location: 2684-2908 bp Feature: domain Description: PHA02517 Location: 2777-2867 bp Feature: domain Description: PHA0251 7 Location: 2777-2867 bp Feature: gene Location: 2949-3695 bp Feature: domain Description: YkfC Location: 3027-3249 bp Feature: domain Description: YkfC Location: 3027-3249 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3285-3594 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3285-3594 bp Feature: gene Location: 3706-4653 bp Feature: domain Description: Phage_int_SAM_1 Location: 3712-3934 bp Feature: domain Description: Phage_int_SAM_1 Location: 371 2-3934 bp Feature: domain Description: INT_RitC_C_like Location: 4024-4573 bp Feature: domain Description: INT_RitC_C_like Location: 4024-4573 bp Feature: gene Location: 4691-4999 bp Feature: domain Description: PRK06526 Location: 4703-4964 bp Feature: domain Description: PRK06526 Location: 4703-4964 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), YkfC (COG3344), RVT-GII, Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), PRK06526 (transposase; Provisional)

Seq: JACCER010000013.1 Alcaligenaceae bacterium strain CGII-64 NODE_13_length_111443_cov_91.925375, whole genome shotgun sequence (111443 bp)
Overview 1 RT 1: 16638-20289 bp Neighborhood of RT #1 [16638, 20318] RelE YiaG RVT-DGRs PRK06635 Feature: gene Location: 16638-17027 bp Feature: domain Description: RelE Location: 16641-16998 bp Feature: domain Description: RelE Location: 16641-16998 bp Feature: gene Location: 17005-17322 bp Feature: domain Description: YiaG Location: 17014-17317 bp Feature: domain Description: YiaG Location: 17014-17317 bp Feature: gene Location: 17435-17824 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 17525-17723 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1752 5-1772 3 bp Feature: gene Location: 18035-18538 bp Feature: gene Location: 19047-20318 bp Feature: domain Description: PRK06635 Location: 19050-20289 bp Feature: domain Description: PRK06635 Location: 19050-2 02 89 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RelE (pfam06296), YiaG (COG2944), RVT-DGRs, PRK06635 (aspartate kinase; Reviewed)

Seq: JACCER010000007.1 Alcaligenaceae bacterium strain CGII-64 NODE_7_length_169004_cov_94.899951, whole genome shotgun sequence (169004 bp)
Overview 1 RT 1: 54926-60131 bp Neighborhood of RT #1 [54926, 60172] PRK10935 HAMP PRK09776 PRK10060 RVT-DGRs Avd_like Feature: gene Location: 54926-57808 bp Feature: domain Description: PRK10935 Location: 54992-55187 bp Feature: domain Description: PRK1093 5 Location: 54992-55187 bp Feature: domain Description: HAMP Location: 55577-55721 bp Feature: domain Description: HAMP Location: 55577-55721 bp Feature: domain Description: PRK09776 Location: 55721-56036 bp Feature: domain Description: PRK09776 Location: 55721-5603 6 bp Feature: domain Description: PRK10060 Location: 56141-57791 bp Feature: domain Description: PRK10060 Location: 56141-57791 bp Feature: gene Location: 58056-58187 bp Feature: gene Location: 58427-59509 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 58634-59249 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5863 4-59249 bp Feature: gene Location: 59594-59779 bp Feature: gene Location: 59801-60172 bp Feature: domain Description: Avd_like Location: 59828-60131 bp Feature: domain Description: Avd_like Location: 59828-6013 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10935 (nitrate/nitrite two-component system sensor histidine kinase NarQ), HAMP (smart00304), PRK09776 (putative diguanylate cyclase; Provisional), PRK10060 (cyclic di-GMP phosphodiesterase), RVT-DGRs, Avd_like (cd16376)