myRT

myRT report for GCA_013417055.1_ASM1341705v1

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Seq: VPER01000037.1 Acinetobacter sp. YH16056 NODE_37_length_26221_cov_19.2735, whole genome shotgun sequence (26221 bp)
Overview 1 RT 1: 16195-25334 bp Neighborhood of RT #1 [16195, 25357] RMtype1_S_Cbo7060ORF11580P_TRD2-CR2_like RMtype1_S_Cbo7060ORF11580P_TRD2-CR2_like COG4127 PRK04247 RVT-UG5 COG0610 DUF45 Feature: gene Location: 16195-17349 bp Feature: domain Description: RMtype1_S_Cbo7060ORF11580P_TRD2-CR2_like Location: 16201-16753 bp Feature: domain Description: RMtype1 _S_Cbo7060ORF1 1 580P_TRD2-CR2_like Location: 1 6201 -1 6753 bp Feature: domain Description: RMtype1_S_Cbo7060ORF11580P_TRD2-CR2_like Location: 17059-17317 bp Feature: domain Description: RMtype1 _S_Cbo7060ORF1 1 580P_TRD2-CR2_like Location: 1 7059-1 731 7 bp Feature: gene Location: 17349-18290 bp Feature: domain Description: COG4127 Location: 17574-17838 bp Feature: domain Description: COG41 27 Location: 1 7574-1 7838 bp Feature: domain Description: PRK04247 Location: 17991-18261 bp Feature: domain Description: PRK04247 Location: 1 7991 -1 8261 bp Feature: gene Location: 18328-21291 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 18838-19303 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1 8838-1 9303 bp Feature: gene Location: 21334-24615 bp Feature: domain Description: COG0610 Location: 21361-24298 bp Feature: domain Description: COG061 0 Location: 21 361 -24298 bp Feature: gene Location: 24605-25357 bp Feature: domain Description: DUF45 Location: 24710-25334 bp Feature: domain Description: DUF45 Location: 2471 0-25334 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RMtype1_S_Cbo7060ORF11580P_TRD2-CR2_like (cd17284), COG4127 (Predicted restriction endonuclease, Mrr-cat superfamily ), PRK04247 (endonuclease NucS), RVT-UG5, COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), DUF45 (pfam01863)

Seq: VPER01000040.1 Acinetobacter sp. YH16056 NODE_40_length_22312_cov_32.0387, whole genome shotgun sequence (22312 bp)
Overview 1 RT 1: 18251-21790 bp Neighborhood of RT #1 [18251, 21819] HMA HMA RVT_N RVT-GII LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 TnpB_IS66 Feature: gene Location: 18251-18445 bp Feature: domain Description: HMA Location: 18260-18428 bp Feature: domain Description: HMA Location: 182 60-1842 8 bp Feature: gene Location: 18622-18867 bp Feature: domain Description: HMA Location: 18664-18844 bp Feature: domain Description: HMA Location: 18664-18844 bp Feature: gene Location: 18924-19436 bp Feature: domain Description: RVT_N Location: 18984-19227 bp Feature: domain Description: RVT_N Location: 18984-192 2 7 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19272-19407 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 192 72 -19407 bp Feature: gene Location: 19976-21355 bp Feature: domain Description: LZ_Tnp_IS66 Location: 20126-20351 bp Feature: domain Description: LZ_Tnp_IS66 Location: 2 012 6-2 0351 bp Feature: domain Description: zf-IS66 Location: 20375-20501 bp Feature: domain Description: zf-IS66 Location: 2 0375-2 0501 bp Feature: domain Description: DDE_Tnp_IS66 Location: 20543-21335 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2 0543-2 1335 bp Feature: gene Location: 21430-21819 bp Feature: domain Description: TnpB_IS66 Location: 21502-21790 bp Feature: domain Description: TnpB_IS66 Location: 2 1502 -2 1790 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HMA (pfam00403), RVT_N (pfam13655), RVT-GII, LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), TnpB_IS66 (pfam05717)

Seq: VPER01000044.1 Acinetobacter sp. YH16056 NODE_44_length_13103_cov_2.11822, whole genome shotgun sequence (13103 bp)
Overview 1 RT 1: 847-3324 bp Neighborhood of RT #1 [847, 3347] HTH_XRE RVT-Retrons PHA02518 Feature: gene Location: 847-1011 bp Feature: gene Location: 1072-1401 bp Feature: domain Description: HTH_XRE Location: 1087-1249 bp Feature: domain Description: HTH_XRE Location: 1087-1249 bp Feature: gene Location: 1349-2272 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1535-2075 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 153 5-2075 bp Feature: gene Location: 2310-2606 bp Feature: gene Location: 2607-3347 bp Feature: domain Description: PHA02518 Location: 2709-3324 bp Feature: domain Description: PHA02518 Location: 2709-3 3 24 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, PHA02518 (ParA-like protein; Provisional)