myRT

myRT report for GCA_013417065.1_ASM1341706v1

Download annotations/find similar RTs

Seq: VPET01000184.1 Acinetobacter sp. YH16058 NODE_183_length_1021_cov_0.4217, whole genome shotgun sequence (1021 bp)
Overview 1 RT 1: 207-1015 bp Neighborhood of RT #1 [207, 1020] HTH_XRE RVT-Retrons Feature: gene Location: 207-536 bp Feature: domain Description: HTH_XRE Location: 222-384 bp Feature: domain Description: HTH_XRE Location: 222-384 bp Feature: gene Location: 484-1020 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 670-1015 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 670-1 01 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons

Seq: VPET01000033.1 Acinetobacter sp. YH16058 NODE_186, whole genome shotgun sequence (6952 bp)
Overview 1 RT 1: 2957-6577 bp Neighborhood of RT #1 [2957, 6585] COG3293 COG3293 PHA02517 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 2957-3589 bp Feature: domain Description: COG3293 Location: 2966-3275 bp Feature: domain Description: COG32 93 Location: 2 966-32 75 bp Feature: domain Description: COG3293 Location: 3311-3524 bp Feature: domain Description: COG32 93 Location: 3311-352 4 bp Feature: gene Location: 3746-3997 bp Feature: domain Description: PHA02517 Location: 3773-3893 bp Feature: domain Description: PHA02 517 Location: 3773-3893 bp Feature: gene Location: 4050-5321 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4278-4935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42 78-4935 bp Feature: domain Description: GIIM Note: maturase Location: 5013-5244 bp Feature: domain Description: GIIM Note: maturase Location: 5013-52 44 bp Feature: gene Location: 5786-6223 bp Feature: domain Description: PHA02517 Location: 5852-6203 bp Feature: domain Description: PHA02 517 Location: 5852 -62 03 bp Feature: gene Location: 6223-6585 bp Feature: domain Description: InsE Location: 6274-6577 bp Feature: domain Description: InsE Location: 62 74-6577 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3293 (Transposase ), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963)

Seq: VPET01000022.1 Acinetobacter sp. YH16058 NODE_21_length_48867_cov_49.5016, whole genome shotgun sequence (48867 bp)
Overview 1 RT 1: 19575-23672 bp Neighborhood of RT #1 [19575, 23672] DDE_Tnp_IS66 RVT_N RVT-GII GIIM DDE_Tnp_IS66_C Feature: gene Location: 19575-19928 bp Feature: domain Description: DDE_Tnp_IS66 Location: 19578-19908 bp Feature: domain Description: DDE_Tnp_IS66 Location: 19578-19908 bp Feature: gene Location: 20254-20421 bp Feature: gene Location: 20468-22144 bp Feature: RT Description: RVT_N Location: 20528-20771 bp Feature: RT Description: RVT_N Location: 20528-20771 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20816-21452 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20816-21452 bp Feature: domain Description: GIIM Note: maturase Location: 21506-21737 bp Feature: domain Description: GIIM Note: maturase Location: 21506-2173 7 bp Feature: gene Location: 22258-22476 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 22342-22453 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 223 42-22453 bp Feature: gene Location: 23007-23672 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817)