myRT

myRT report for GCA_013417705.1_ASM1341770v1

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Seq: VPDL01000023.1 Acinetobacter sp. YH12235 NODE_23_length_56745_cov_45.130912, whole genome shotgun sequence (56745 bp)
Overview 1 RT 1: 19175-23485 bp Neighborhood of RT #1 [19175, 23583] DUF3287 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 RVT_N RVT-GII GIIM DDE_Tnp_IS66_C HTH_XRE Feature: gene Location: 19175-20617 bp Feature: domain Description: DUF3287 Location: 19199-19358 bp Feature: domain Description: DUF3287 Location: 1 91 99-1 9358 bp Feature: domain Description: LZ_Tnp_IS66 Location: 19388-19613 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1 9388-1 961 3 bp Feature: domain Description: zf-IS66 Location: 19637-19763 bp Feature: domain Description: zf-IS66 Location: 1 9637-1 9763 bp Feature: domain Description: DDE_Tnp_IS66 Location: 19805-20597 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 9805-20597 bp Feature: gene Location: 20943-21110 bp Feature: gene Location: 21157-22833 bp Feature: RT Description: RVT_N Location: 21217-21460 bp Feature: RT Description: RVT_N Location: 21 21 7-21 460 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21505-22141 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 505-221 41 bp Feature: domain Description: GIIM Note: maturase Location: 22195-22426 bp Feature: domain Description: GIIM Note: maturase Location: 221 95-22426 bp Feature: gene Location: 22947-23165 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 23031-23142 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 23031 -231 42 bp Feature: gene Location: 23344-23583 bp Feature: domain Description: HTH_XRE Location: 23353-23485 bp Feature: domain Description: HTH_XRE Location: 23353-23485 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3287 (pfam11690), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), HTH_XRE (smart00530)